Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01125 ATGGCATCCACCACATTGAGCACTTCAATACCAACAAGAGGAGAATCATTTTCAAATTTGATTCCAAACAAACCCTTAAATTCCAAAGTCATTAATTTTGCTTTTTTAAAACGCGCCGCCCCTCGAGGGGTCGCGGCAACGGTTAGGTCGACGTGGAGGACAGCGGAGCACGGCGGAGCATTGGCAGCGGAGGAGGAGGATGAGGAGATGGGGAAGATCCGGCGGCTGCAGAACGGGTCGGACGTAAGAGGGGTGGCCATCGAGGGGGAGAAGGGGAGGGTGGTGGATTTGACCGCGGCGGCGGTGGAGGCGATAGCGGAGAGTTTCGCCGAGTGGGTGATCGAGGGGATGGAAACCGGGCGGCGCGTGAGAGTCTCGGTGGGGAGAGACCCTAGAATTTCCGGCGGTGCTTTGAGTGTTGCAGTGTTCGCCGGAGTTAGTAGGGCGGGATGTTTGGTGTTTGATATGGGACTTGCCACCACGCCGGCGTGTTTCATGAGCACTGTTTTGCCTCCTTTTTCTTATGATGCTTCCATTATGTTAACAGCATCTCACTTACCATACACACGAAATGGGATGAAGTTCTTCACAAAGAGAGGAGGGCTAAGCTCGCCGGAGGTGGAGGAGATATGCGACAGAGCCGCCGTGAAGTACGCCAACAGAGTGGTCAAAGTCTCCACTCTTCTCCGAACGCCGCCGTCCAAGGTGGATTTCATGGCGGCTTATTCACAACATCTCAGAGATATCATTAAACAAAGAATCAATCATCCTTTGCATTATGATACTCCTCTCAAGGGATTTCAGATAATAGTGAATGCGGGTAACGGATCCGGAGGCTTCTTCACATGGGATGTCTTAGACAAGCTCGGCGCAGACACTTTTGGCTCTCTCCATCTCAACCCAGACGGCATGTTCCCCAACCACATCCCTAATCCAGAGGACAAAACCGCCATGTCACTCACTCGAGCCGCTGTCCTTGAACACGAAGCCGACCTCGGTGTCGTCTTCGACACTGACGTTGACCGCAGCGGCGTCGTCGATCACGAGGGAAACCCAATCAACGGCGACAAGCTCATTGCCCTAATGTCGGGCATCGTCCTCCGAGAGCACCCTGGCACGACCATCGTTACCGATGCCCGCACCAGCGTTGCCCTCACAAAGTTTATCACCAACCGCGGCGGGCAACATTGTCTCTACCGCGTCGGGTATCGAAATGTCATCGACAAAGGAATCCAACTCGACGCGGACGGAATCGAGACGCATCTGATGATGGAGACGTCGGGGCATGGTGCACTTAAGGAGAATTATTTTTTGGATGATGGAGCTTACATGGTTGTGAAGATTATTATTGAAATGGTGAGAATGAAGCTAGAGGGATCAGATGAAGGGATTGGGAGTCTTATAAAAGATCTTGAAGAGCCATTGGAGTCTGTGGAATTGAGATTGAATGAAGGGAAGCTTGAGGGATGGGAACTGGACTCATGTGGAGATTGTTGGGTGCATGAAGGCTGCTTGGTGGACTTAAATGACCATCCCAAGCCAATTGATGCACAAATGTACAGGGTTAAAGTATATGATAAAGAAAATGGGGAAGTTGGTTGGGTACACTTAAGGCAGAGCATTCACAATCCAAACCTTGCTTTGAATATGCAATCATCTCTGCCTGGAGGCTGCCTCCAAATCACTAGAGACTTTAGAGATAAGTATGCTCCTACTCCCTTAAGTTTAATTTAG 1734 50.81 MASTTLSTSIPTRGESFSNLIPNKPLNSKVINFAFLKRAAPRGVAATVRSTWRTAEHGGALAAEEEDEEMGKIRRLQNGSDVRGVAIEGEKGRVVDLTAAAVEAIAESFAEWVIEGMETGRRVRVSVGRDPRISGGALSVAVFAGVSRAGCLVFDMGLATTPACFMSTVLPPFSYDASIMLTASHLPYTRNGMKFFTKRGGLSSPEVEEICDRAAVKYANRVVKVSTLLRTPPSKVDFMAAYSQHLRDIIKQRINHPLHYDTPLKGFQIIVNAGNGSGGFFTWDVLDKLGADTFGSLHLNPDGMFPNHIPNPEDKTAMSLTRAAVLEHEADLGVVFDTDVDRSGVVDHEGNPINGDKLIALMSGIVLREHPGTTIVTDARTSVALTKFITNRGGQHCLYRVGYRNVIDKGIQLDADGIETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMKLEGSDEGIGSLIKDLEEPLESVELRLNEGKLEGWELDSCGDCWVHEGCLVDLNDHPKPIDAQMYRVKVYDKENGEVGWVHLRQSIHNPNLALNMQSSLPGGCLQITRDFRDKYAPTPLSLI 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14784135 14793509 - Lsi04G011250.1 Lsi04g01125 661174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01125 577 Gene3D - 268 346 - -
Lsi04g01125 577 Gene3D - 77 225 - -
Lsi04g01125 577 PANTHER PHOSPHOHEXOSE MUTASE 46 569 - -
Lsi04g01125 577 SUPERFAMILY Phosphoglucomutase, first 3 domains 80 250 IPR016055 GO:0005975|GO:0016868
Lsi04g01125 577 SUPERFAMILY Phosphoglucomutase, first 3 domains 354 456 IPR016055 GO:0005975|GO:0016868
Lsi04g01125 577 SUPERFAMILY Phosphoglucomutase, first 3 domains 241 352 IPR016055 GO:0005975|GO:0016868
Lsi04g01125 577 PRINTS Phosphoglucomutase/phosphomannomutase family signature 266 285 IPR005841 GO:0005975|GO:0016868
Lsi04g01125 577 PRINTS Phosphoglucomutase/phosphomannomutase family signature 330 345 IPR005841 GO:0005975|GO:0016868
Lsi04g01125 577 PRINTS Phosphoglucomutase/phosphomannomutase family signature 177 191 IPR005841 GO:0005975|GO:0016868
Lsi04g01125 577 PRINTS Phosphoglucomutase/phosphomannomutase family signature 301 314 IPR005841 GO:0005975|GO:0016868
Lsi04g01125 577 PANTHER OS06G0476200 PROTEIN 46 569 - -
Lsi04g01125 577 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 354 454 IPR005846 GO:0005975|GO:0016868
Lsi04g01125 577 CDD PMM_PGM 76 567 - -
Lsi04g01125 577 Gene3D - 347 469 - -
Lsi04g01125 577 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 75 216 IPR005844 GO:0005975|GO:0016868
Lsi04g01125 577 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 241 350 IPR005845 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01125 - - - csv:101207539 1037.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01125 Lsi-Chr4:14784135 Lsi08g00720 Lsi-Chr8:15567962 1.88E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01125 Lsi_Chr04 FPKM 345.175934 368.671326 310.135315 309.552185 437.525879 441.802795 439.288696 387.554565 386.651367 404.196716