Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01126 | ATGAACAATCGGGCTGGACTCCTTCGAATTCGCCTGCTTCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCTCCTGCGCCAACCAGAAATTCAAATCTCGTGTGGTGAAAAAAAACTGCAATCCAGAATGGAACGAGGAATTCACACTTTCGATCACAGATATCAACACGCCAATCAAATTAGCAGTGTTCGACAAAGATAGATTCACAAAGGACGATGGAATGGGGGATGCAGAGATCGACATAAAACCATACATAGAGTGTTTGAATATGGGATTAGAGAATCTTCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAGAGCCCTTGTGTTTGGAACGATGGTAAGATTATCCAAGACATGACTCTCAGATTGCGGAATGTTGAATGTGGTGAAATCATGATCCAGCTTCAGTTGTTCAATGTTTCTATTTTCAAAGGCCTAAGAACCTACTCTTTAGCCTGA | 522 | 44.06 | MNNRAGLLRIRLLRGHNLAIRDAPTRSSDPYVVISCANQKFKSRVVKKNCNPEWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNSLADESPCVWNDGKIIQDMTLRLRNVECGEIMIQLQLFNVSIFKGLRTYSLA | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 14816237 | 14817954 | - | Lsi04G011260.1 | Lsi04g01126 | 661175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01126 | 173 | Gene3D | C2 domain | 1 | 162 | IPR035892 | - | |
Lsi04g01126 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
Lsi04g01126 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 163 | - | - | |
Lsi04g01126 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 159 | IPR035892 | - | |
Lsi04g01126 | 173 | Pfam | C2 domain | 6 | 94 | IPR000008 | - | |
Lsi04g01126 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
Lsi04g01126 | 173 | CDD | C2_ArfGAP | 6 | 150 | - | - | |
Lsi04g01126 | 173 | PRINTS | C2 domain signature | 48 | 61 | IPR000008 | - | |
Lsi04g01126 | 173 | PRINTS | C2 domain signature | 24 | 36 | IPR000008 | - | |
Lsi04g01126 | 173 | PRINTS | C2 domain signature | 69 | 77 | IPR000008 | - | |
Lsi04g01126 | 173 | SMART | C2_3c | 7 | 104 | IPR000008 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01126 | Lsi-Chr4:14816237 | Lsi05g00329 | Lsi-Chr5:4192568 | 7.97E-63 | dispersed | |
Lsi04g01126 | Lsi-Chr4:14816237 | Lsi06g01282 | Lsi-Chr6:23371671 | 6.01E-56 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01126 | - | - | csv:101205028 | 327.791 |