Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01126 ATGAACAATCGGGCTGGACTCCTTCGAATTCGCCTGCTTCGAGGCCACAATCTCGCCATTCGCGATGCTCCAACTCGTAGCAGCGATCCCTACGTCGTCATCTCCTGCGCCAACCAGAAATTCAAATCTCGTGTGGTGAAAAAAAACTGCAATCCAGAATGGAACGAGGAATTCACACTTTCGATCACAGATATCAACACGCCAATCAAATTAGCAGTGTTCGACAAAGATAGATTCACAAAGGACGATGGAATGGGGGATGCAGAGATCGACATAAAACCATACATAGAGTGTTTGAATATGGGATTAGAGAATCTTCCAAATGGTTGTGTGGTGAAAAGGGTTCAACCAAGCAGATCAAACAGCCTTGCAGATGAGAGCCCTTGTGTTTGGAACGATGGTAAGATTATCCAAGACATGACTCTCAGATTGCGGAATGTTGAATGTGGTGAAATCATGATCCAGCTTCAGTTGTTCAATGTTTCTATTTTCAAAGGCCTAAGAACCTACTCTTTAGCCTGA 522 44.06 MNNRAGLLRIRLLRGHNLAIRDAPTRSSDPYVVISCANQKFKSRVVKKNCNPEWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLENLPNGCVVKRVQPSRSNSLADESPCVWNDGKIIQDMTLRLRNVECGEIMIQLQLFNVSIFKGLRTYSLA 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14816237 14817954 - Lsi04G011260.1 Lsi04g01126 661175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01126 173 Gene3D C2 domain 1 162 IPR035892 -
Lsi04g01126 173 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Lsi04g01126 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 1 163 - -
Lsi04g01126 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 159 IPR035892 -
Lsi04g01126 173 Pfam C2 domain 6 94 IPR000008 -
Lsi04g01126 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Lsi04g01126 173 CDD C2_ArfGAP 6 150 - -
Lsi04g01126 173 PRINTS C2 domain signature 48 61 IPR000008 -
Lsi04g01126 173 PRINTS C2 domain signature 24 36 IPR000008 -
Lsi04g01126 173 PRINTS C2 domain signature 69 77 IPR000008 -
Lsi04g01126 173 SMART C2_3c 7 104 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01126 Lsi-Chr4:14816237 Lsi05g00329 Lsi-Chr5:4192568 7.97E-63 dispersed
Lsi04g01126 Lsi-Chr4:14816237 Lsi06g01282 Lsi-Chr6:23371671 6.01E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01126 - - csv:101205028 327.791