Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01132 ATGGCTGGAGATATCGAACAGCCGTTTACCTTTAATTTTCAGGTAGAGTCTGCAATCTCAGACTCCATATCATTTGGAAGGTTTGAAAAAGAATCTTTATCTTGGGAAAGGAGGTCATCATTCTCTCATAATCGTTATCTAGAAGAGGTAGAGAAATTCTCCAAACCGGGTTCAGTCAATGAGAAAAAGGCTTACTTTGAGGCTCATTTCAAGAAAAAAGGAGGATTGCTTGGTCAGAATTCGGCAGAGTCCCATACTATTGAGAATGATGTATCAGTGCAAGCGAATCAAGAGGCAGACGTTGAGATTATAAACATGGAAAATCATCATGGCCATTTTGATGATAGCTCTGTCAGTTCACAAGACCATGGGGACCATTTGGTGACAGAATTTGAAGATATGCCAAAACATGGAATTTCAGCTCCTAATCCTAAATTTGAAAATTCTTTCAGCTGTGTTAATGCTGAAATAAATGAACAAGATGACACTGGGGAGAACAAGTTCTCAACTTTTGTTAGTGATGAACCAGAGGGTGAAATAAAGCAAGATGCCAAGAGTCATGGAATGAGTGAGAATATGCAATCTGAAGCCATGGAAGCAGTCCCAAAAACTGAACTAGTGAAGAAAGCTGGCAACAACTGCTCAGGAAGTCAGAAAACTCTCACTTCGAAGATGATATCTAGAAGGGAAACAAAGGCCTCCTCCAGATCTCAGTCTAGTATTCGTCAGAGTCAAAGAAATGTTTCGGGTGATGTTCTCAAATCCAATAAAAGCAAAGGCGAGCCTTCACATACAACTTGCACAGAAGCTCGTCCATCAAAAGCTGCCATTTCTCGTACAAATACTGTCCGTCGAACGCCCAAAGTTGAGGATTCTAAAGTTCTCAAGGGAAGAACTGTTCTCGAGAGTAGAAGATGTAGTGGTGAGAAGGTACAAACTTCTGGAGTATCATATTCTTCTCCATCGAAGCTCGAGTCTAGATCATATTTAAAGACAACCACCAGGCAAAGTCGGACTGTCAACTCAGCCATGCAAGATACAGGGAAAAGTGCTTCAGCATCAAATAGAAGCACGGGCTTGGCAGAAAGGAGAAAACAGGCAAGCACATCTCTTGTGCAAAGAGGAGGTAGCATTGAACAGGGGAATAGGAACGGTTACTTGTGTCCCGGTGTTGTGTTTAATGGTACCAAAATAAGGAACACTTTAAGGAAGTCCACAGCTGTGGCATCGTCCTCGCATTCGCAGTTAGGAAAAGACATCGATTCCTTTTCAAGTGAAGTGCCATATAGTTCAAAAAACATGAGTTACCACGCAGTTGTGCATGTTGAAGCAAATGGTAATTCTTCGGGTTCGTCAGCCAACCAAAAGTGTCTACAAGAAGCTGTATCAGAAACCGAAAACAAGAGAAGGAAAGACAAAATGAAGGAGAAGGAACCCAATATGCAGACTTCCCGAATTTCGGAGAATTATAAGACGATGTCAAAACAAGGAAGCGAGGGGAGGCAGAAAGTTGGGGTGCAGAGAAACATGTCGATGGGTAGATCAAGGAACATTAAGGGTGTTTCTGGCTCCGGAATGGGACGATTTGCTGTTGGTGTTACGTCGTGA 1608 42.29 MAGDIEQPFTFNFQVESAISDSISFGRFEKESLSWERRSSFSHNRYLEEVEKFSKPGSVNEKKAYFEAHFKKKGGLLGQNSAESHTIENDVSVQANQEADVEIINMENHHGHFDDSSVSSQDHGDHLVTEFEDMPKHGISAPNPKFENSFSCVNAEINEQDDTGENKFSTFVSDEPEGEIKQDAKSHGMSENMQSEAMEAVPKTELVKKAGNNCSGSQKTLTSKMISRRETKASSRSQSSIRQSQRNVSGDVLKSNKSKGEPSHTTCTEARPSKAAISRTNTVRRTPKVEDSKVLKGRTVLESRRCSGEKVQTSGVSYSSPSKLESRSYLKTTTRQSRTVNSAMQDTGKSASASNRSTGLAERRKQASTSLVQRGGSIEQGNRNGYLCPGVVFNGTKIRNTLRKSTAVASSSHSQLGKDIDSFSSEVPYSSKNMSYHAVVHVEANGNSSGSSANQKCLQEAVSETENKRRKDKMKEKEPNMQTSRISENYKTMSKQGSEGRQKVGVQRNMSMGRSRNIKGVSGSGMGRFAVGVTS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15244116 15249370 + Lsi04G011320.1 Lsi04g01132 661181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01132 535 MobiDBLite consensus disorder prediction 483 518 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 304 377 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 210 224 - -
Lsi04g01132 535 PANTHER TPX2 (TARGETING PROTEIN FOR XKLP2) PROTEIN FAMILY-RELATED 1 366 IPR044216 -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 306 377 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 232 283 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 459 535 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 462 482 - -
Lsi04g01132 535 MobiDBLite consensus disorder prediction 209 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01132 - - - csv:101208552 734.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00505 Lsi-Chr4:4689668 Lsi04g01132 Lsi-Chr4:15244116 8.31E-18 dispersed
Lsi04g01132 Lsi-Chr4:15244116 Lsi08g01620 Lsi-Chr8:24128208 1.51E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g418 . . . . . . . . Cmo04g01083 . Cma04g01004 . Car04g00941 Car04g00058 . . . . . . . . . . Cla07g00588 Cam07g0614 Cec07g0681 Cco07g0662 Clacu07g0623 Cmu07g0648 Cre07g0994 Cone13ag0767 Cone19ag0770 . . Lsi04g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01034 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009363 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01132 Lsi_Chr04 FPKM 61.288399 63.114147 30.40053 32.662682 25.374792 27.793245 27.557371 22.63089 23.549631 23.425186