Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01137 ATGTATATACTGAATTTGTATAGACCCTCTTTCGGGCATCTCTGGCAATGCTGTGGACATAAGGATTTGCGGGGCTGTTCTCGAGGGTTAACACACATTCCAATCTCTACTGCTCGCGGTTTAGGTTCCAGGAAAATTATTGCAATGTCTACATCTGTATCCAAAGATTCTGGGATATCAGTTGCATCAGTAGCAATCCAGCCTCCATCTCACCCTACCTATGATCTGCGTGGCACCATCAAGTTAGCCCTTGCAGAAGATTCTGCTGATTTTGGTGATGTAACATCTTTGGCAACCATTCCCTCTGACATGCTTGTGGATGCTTTCTTTTTGGCCAAAGAGGACGGCATTGTTGCTGGTATTGCTCTTGCAGACATGGTGTTCCAGGAGGTTGATCCTTCAATTAGGGTGGAATGGTCTCAAAAGGATGGAGACTATATTCATAAAGGACTACAATTTGGAAAAGTTTCTGGGCAAGCACAAAGCATCCTTGTAGCTGAAAGGGTGGCACTAAACTTTATGCAGAGAATGAGTGGAATTGCAACTTTAACTAAGGCAATGGCAGATGCTGCAAGCCCTGCACGCATTCTGGAAACGAGAAAAACTGCTCCAGGTTTACGTTTGGTGGATAAGTGGGCGGTATTAATTGGTGGAGGTCAAAATCACAGAATGGGTTTATTTGATATGGTGTTGATAAAAGATAATCATATATCAGCAGCTGGAGGCATCTCAAATGCCATTAAATCTGTTGACTTGTATCTGCAACAAAGACATCTTAAAATGAATGTCGAGGTTGAGACCAGGACTCTTGAGGAAGTTCATGAGGTATTACACTATGCAACTGAAAACAAGACATCCTTAACTAGGATGATGTTGGATAATATGGTAGTTCCACTCCCAAGTGGTGATGTTGATGTGTCCATGCTTAAGGAGGCTGTAGACATCATCAATGGGAGATTTGAGACTGAGGCTTCAGGAAATGTTACTCTGCAAACTATACAGAAAATTGGACAAACGGGGGTTACTTACATATCCAGTGGTGCGCTGACACATTCTGTGAAAGCACTTGATATCTCTCTGAAGATAGACACAGAGTTGGCTCTTCAAGTTGGAAGACGTACAAAACGAGCCTGA 1134 42.86 MYILNLYRPSFGHLWQCCGHKDLRGCSRGLTHIPISTARGLGSRKIIAMSTSVSKDSGISVASVAIQPPSHPTYDLRGTIKLALAEDSADFGDVTSLATIPSDMLVDAFFLAKEDGIVAGIALADMVFQEVDPSIRVEWSQKDGDYIHKGLQFGKVSGQAQSILVAERVALNFMQRMSGIATLTKAMADAASPARILETRKTAPGLRLVDKWAVLIGGGQNHRMGLFDMVLIKDNHISAAGGISNAIKSVDLYLQQRHLKMNVEVETRTLEEVHEVLHYATENKTSLTRMMLDNMVVPLPSGDVDVSMLKEAVDIINGRFETEASGNVTLQTIQKIGQTGVTYISSGALTHSVKALDISLKIDTELALQVGRRTKRA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15479314 15509510 + Lsi04G011370.1 Lsi04g01137 661186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01137 377 TIGRFAM nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 80 362 IPR004393 GO:0004514|GO:0009435
Lsi04g01137 377 PANTHER NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] 67 371 - -
Lsi04g01137 377 SUPERFAMILY Nicotinate/Quinolinate PRTase N-terminal domain-like 68 179 - -
Lsi04g01137 377 SUPERFAMILY Nicotinate/Quinolinate PRTase C-terminal domain-like 180 362 IPR036068 GO:0009435
Lsi04g01137 377 Pfam Quinolinate phosphoribosyl transferase, N-terminal domain 90 178 IPR022412 GO:0016763
Lsi04g01137 377 Gene3D - 83 360 IPR037128 GO:0016763
Lsi04g01137 377 CDD QPRTase 80 361 IPR004393 GO:0004514|GO:0009435
Lsi04g01137 377 Gene3D Aldolase class I 192 352 IPR013785 -
Lsi04g01137 377 Pfam Quinolinate phosphoribosyl transferase, C-terminal domain 180 361 IPR002638 GO:0004514|GO:0009435
Lsi04g01137 377 PANTHER NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] 67 371 IPR027277 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01137 K00767 nadC, QPRT; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] - csv:101208793 691.419
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g415 . . . . . . Bma14g01593 . Cmo04g01079 . Cma04g01001 . Car04g00939 . . . . . . . . . . . Cla07g00598 Cam07g0626 Cec07g0692 Cco07g0672 Clacu07g0630 Cmu07g0656 Cre07g1003 Cone13ag0769 . . . Lsi04g01137 . . Cme10g01500 . Blo11g00734 . . Bpe11g01607 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01042 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003846 2 3 1 1 2 2 1 2 2 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 0 1 1 6 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01137 Lsi_Chr04 FPKM 6.912982 7.825508 17.13492 16.933361 15.349035 16.023304 15.519856 4.681307 5.038843 4.77815