Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01144 ATGTCTTCCTTAACCATTCCCCCTCTTCTTACTTCTCCCCGGGACGATGCTGCCCTACTTTACCGCGCCTTCAAAGGTTTTGGATGTGATACTGCTGCAGTTATCAATGTTCTTGCACATAGAGATGCAGCACAGCGTGCTCTCATTCAGCAGGAATACAGAGCCATAAAAATCTTCTTGTCGTTGTTAGGAGAAATGAAACATGTTCAGTATTCTAAAGACCATAACTCGTGCATCCTAATTTTATGGTTTTCTTTGGTTCCAGTTAAGCCGAATAAGAATCATTGGGATGCAATTTTGCTATGGATGTATGATCCAGCAACCAGAGATGCTATTATAGTGAAGGAGGCTATATATGGAGAAACTTGTACTCTTAGAGCTGCCACTGAAGTAATTTGTTCTCGTACACCGTCACAGATTCATCATTTTAAACAAGTTTACTTGACCATGTTTCGTTCTCCCCTTGAACGTGATATTGAACGCACTGCGACTGGTGATCATCAAAAGCTGCTATTGGCTTACGTTAGTAAACCGCGCTATGAAGGTCCAGAAGTGGACAGAGCTCTGGTAGAGAAAGATGCCAAATCTCTCTATAAAGCTGGAGAGAAGAGATTGGGAACTGATGAAGAGAAGTTCATAAAGATTTTCAGTGAAAGAAGCAGGGCACATCTCTATGCTGTTAGTCATGCTTATAAACATTCATATGGACACTCCTTGAAAGAGGCTATTAAAAAAGAAACATCTGGGAATTTTGAGCATGGCCTTCTAACAATTTTGTTGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTACTGCGAAAGGCGATGAAGGGAATGGGAACAGATGACTCGACGCTGATAAGAGTAATTGTGTCAAGAGCTGAGATAGATATGCAGTATATAAAGGCAGAATACCACAAGAAGTATAAGAAAACACTGAACAAAGCAGTTCATTCTGAGACTTCAGGCAGCTACAAGGACTTTCTTCTCTCTTTGTTGGGTCCTGATCATTAG 1017 41.1 MSSLTIPPLLTSPRDDAALLYRAFKGFGCDTAAVINVLAHRDAAQRALIQQEYRAIKIFLSLLGEMKHVQYSKDHNSCILILWFSLVPVKPNKNHWDAILLWMYDPATRDAIIVKEAIYGETCTLRAATEVICSRTPSQIHHFKQVYLTMFRSPLERDIERTATGDHQKLLLAYVSKPRYEGPEVDRALVEKDAKSLYKAGEKRLGTDEEKFIKIFSERSRAHLYAVSHAYKHSYGHSLKEAIKKETSGNFEHGLLTILLCAENPGFYFAKVLRKAMKGMGTDDSTLIRVIVSRAEIDMQYIKAEYHKKYKKTLNKAVHSETSGSYKDFLLSLLGPDH 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 15853543 15859047 + Lsi04G011440.1 Lsi04g01144 661193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01144 338 SUPERFAMILY Annexin 2 337 IPR037104 GO:0005509|GO:0005544
Lsi04g01144 338 Gene3D Annexin 179 263 IPR037104 GO:0005509|GO:0005544
Lsi04g01144 338 PANTHER ANNEXIN 7 56 - -
Lsi04g01144 338 PANTHER ANNEXIN 97 338 - -
Lsi04g01144 338 ProSiteProfiles Annexin repeat profile. 11 84 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 ProSitePatterns Annexin repeat signature. 281 333 IPR018252 GO:0005509|GO:0005544
Lsi04g01144 338 Gene3D Annexin 1 79 IPR037104 GO:0005509|GO:0005544
Lsi04g01144 338 SMART annex3 122 174 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 SMART annex3 281 333 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 SMART annex3 206 258 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 ProSiteProfiles Annexin repeat profile. 188 260 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 PANTHER ANNEXIN 7 56 - -
Lsi04g01144 338 Gene3D Annexin 105 176 IPR037104 GO:0005509|GO:0005544
Lsi04g01144 338 ProSiteProfiles Annexin repeat profile. 264 335 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 Pfam Annexin 268 333 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 Pfam Annexin 193 258 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 Pfam Annexin 110 173 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 Pfam Annexin 16 55 IPR018502 GO:0005509|GO:0005544
Lsi04g01144 338 Gene3D Annexin 265 336 IPR037104 GO:0005509|GO:0005544
Lsi04g01144 338 PRINTS Annexin family signature 277 297 IPR001464 GO:0005509|GO:0005544
Lsi04g01144 338 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Lsi04g01144 338 PRINTS Annexin family signature 321 334 IPR001464 GO:0005509|GO:0005544
Lsi04g01144 338 PANTHER ANNEXIN 97 338 - -
Lsi04g01144 338 ProSiteProfiles Annexin repeat profile. 105 176 IPR018502 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01144 K17098 ANNAT; annexin D - csv:101209769 546.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01144 Lsi-Chr4:15853543 Lsi06g00570 Lsi-Chr6:7421975 1.87E-48 dispersed
Lsi04g01144 Lsi-Chr4:15853543 Lsi04g01146 Lsi-Chr4:15866156 1.14E-161 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g363 Blo01g00737 . . . . . . . Cmo04g01556 Cmo18g01002 . . Car04g01541 Car18g00915 . Cpe09g00324 Cpe01g01324 Bhi07g01283 . . Lac13g0534 Hepe01g1161 . . Cla07g00607 Cam07g0632 Cec07g0696 Cco07g0682 . Cmu07g0661 Cre07g1009 Cone13ag0799 Cone19ag0805 . . Lsi04g01144 Csa05g02646 Chy10g01178 Cme10g00224 . . . . . . Bma01g00444 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01047 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003010 1 2 1 1 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01144 Lsi_Chr04 FPKM 24.928123 23.85585 746.860962 716.875732 34.488823 39.139481 36.403923 8564.883789 9808.110352 8479.547852