Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01153 ATGGCGAAATACCAAATTCAGACTGGTAGATTAGCGCATCACCTCTTCTGTCTCAGGTCCCATTATGTTCTCTCCATGCTACCAAAATTGTGCTTAAGAACAACGCACAAGTTTGCAGGTCATCTGTTTGAAGTTGGTAAATATGGCACTGCAAGCATCTCGAATCGACCAAAGTTGCTCCATAAGATATCAGTTGTGATGGCTCATGATGATTGTATTGAGAATGCACAATACAACAATCAATCCAATTCAATTCCTGCAGATCCAGACGATGATTGTAATGTTTCTAGAGCATGTAAAAAATTTCCATCCATCATTTTGGGAAGTTCTCCTCCAATCGAATTATTTGATGGCTCTGCATGCTATTCGGACATTGCGAGTTTTTTAGCAGCTAAAAGCGGTGAGAACTTTCTCCTGAATTCAACTTGTGAAGAGTGGGTACAAGATAGTCTGGATGGAACCCTGTCTTCTCTGTACTCTGTCCTTCCAGATTTAGGAAAGTCTTCAGTAAGTGAAGAATATACTTTAAATGCTGATTCGTCCCTTCTGCCTATGAATATTGAGACTGGAACAATATTGAGTAATCCAGCTGTGGAAGGAGATTCTTCAAAAAAGGAGTTAAAATCACAAAATAATGCAGTATCTGGCAGGTCATTTCTTTACCAACCAGTTGGTTGCATATCTGGATTAAGTAAGAGGCACCAGCGCCAGCTTGATGATAGTGGCTTTCACACATTAGGGAAATTACTACATCATTTTCCTCGGACCTATGCCGATTTACAGAATCCACAGGTTAATATTGATGATGGACAATACTTGATATTTATAGGGAAAGTCTTGTCATCAAGGGGAATCAGAGCTAGTTACTCCTTTTCATTTCTTGAGGTAGTTGTGGGCTGTGAAATTGCAGAAAGAGAATCAAATTCTAGTTGTACGGTTGATAATAATACTGGTGGAAAGAAAATTTATTTGCATTTGAAGAAATTCTTTCGTGGTACTCGGTTTACTTTCCAGCCTTTTCTAAGAAGTCTTGGAGAGAAGCATAAAGAGGGAGAGATTGTTTGTGTAAGTGGTAAGGTAAGGACTATGCAATCTGAAGATCACTATGAGATGAGAGAATATAACATTGACGTTCTGCAAGACGAAAAGGATGTGTCATTTTACGCAAAAGAGAGGCCATATCCTATATACCCTTCCAAAAGGGGATTAAATCCAACATTTCTTAGAGATATTATTGCCAGAAGTTCTCCGGATTCATCTTTCAAGCATTCCTATCGTGCGACGACGCAGACTGCAAGTGATGGATGGCAGACGGAGACGGAGGCTCGACGGGTGGCAGGCGGCGATCAGTGCGGGAGCACTGGCCAGTGGCTGAAAAACACAAAATTGGCCTGGGGGATGAAAGATGCTATAAATCCTTTGAAAGGCATAGAGGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTACGTCTTCATGATGCATATAATGGGATTCATCAGCCAAAGAGTATAAAGGAAGCTGATTTGGCTCGCAAACGTTTTATATTTGACGAGTTTTTTTACCTGCAGTTTTCCTTCATCTGTGTGCTTGTGGAAGAGTTGAATGAAAAAGATGACAGGGCTCTGACTATTATTGAAGTTGTTAAAATAGTTAAAAACAGTACGATTGCTTATCCTTGGAGGGACCCCTGTTATGCTTTCAATCAAGAGAAAAAAAGAAAAAAAAGAAAAAAAAGAGGAAAACATTTTGTCAACAGTTTAGATAATTGTAATGGTTATTTGGCACGCTTGTTCCAAATGCTTGAAGGTCTCGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCGTATATGAAGGAATGGGCTTGCCTCACCCAAAAGTTCCTTAAAGCCCTTCCATATTCCCTTACAGAGAGTCAGATGAAAGCTGTTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAATAGGCTCTTGCAGGGTGACGTAGGATGTGGCAAGACAGTGGTTGCTTTTCTGGCATGCATGGAAGTTATAGGCACTGGATATCAGGCAGCTTTCATGGTTCCGACCGAGTTACTTGCTATTCAGCATTATGAGCATTTGCTTGGTTTGTTAGAGAACATGGAAGGGATCGAGAATAAACCTTCTGTTGCTTTACTAACAGGTTCTACCCCCTCAAAACAATCACGGATGATTCGCGAGAGCCTCCAAACAGGAGAGACTTCTTTAGTTATTGGAACTCACAGTCTAATATCGGAAAAAGTGGAGTTCTCTGCTTTACGCATTGCAGTTGTGGATGAGCAGCATCGTTTTGGTGTAGTTCAGAGAGGGAAGTTTAGTAGTAAGTTATTCAACAACTCCTTAAGTTCGAAAATTGCCGCAGAGTACTCTGATGGAACCTCAAGTGGAGATATCTCTATGGCCCCTCATGTTCTTGCCATGTCCGCCACTCCTATTCCAAGGACGCTTGCTCTTGCATTGTATGGAGACATGTCGCTGACTCATGTATGTTCACCATTTTTTCCTGATTTACATGCATTGAAGTATAAACTTCCATGA 2622 40.81 MAKYQIQTGRLAHHLFCLRSHYVLSMLPKLCLRTTHKFAGHLFEVGKYGTASISNRPKLLHKISVVMAHDDCIENAQYNNQSNSIPADPDDDCNVSRACKKFPSIILGSSPPIELFDGSACYSDIASFLAAKSGENFLLNSTCEEWVQDSLDGTLSSLYSVLPDLGKSSVSEEYTLNADSSLLPMNIETGTILSNPAVEGDSSKKELKSQNNAVSGRSFLYQPVGCISGLSKRHQRQLDDSGFHTLGKLLHHFPRTYADLQNPQVNIDDGQYLIFIGKVLSSRGIRASYSFSFLEVVVGCEIAERESNSSCTVDNNTGGKKIYLHLKKFFRGTRFTFQPFLRSLGEKHKEGEIVCVSGKVRTMQSEDHYEMREYNIDVLQDEKDVSFYAKERPYPIYPSKRGLNPTFLRDIIARSSPDSSFKHSYRATTQTASDGWQTETEARRVAGGDQCGSTGQWLKNTKLAWGMKDAINPLKGIEALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQFSFICVLVEELNEKDDRALTIIEVVKIVKNSTIAYPWRDPCYAFNQEKKRKKRKKRGKHFVNSLDNCNGYLARLFQMLEGLGTRIEKDCLLDKYRQPHLNAAYMKEWACLTQKFLKALPYSLTESQMKAVAEIIWDLKRPIPMNRLLQGDVGCGKTVVAFLACMEVIGTGYQAAFMVPTELLAIQHYEHLLGLLENMEGIENKPSVALLTGSTPSKQSRMIRESLQTGETSLVIGTHSLISEKVEFSALRIAVVDEQHRFGVVQRGKFSSKLFNNSLSSKIAAEYSDGTSSGDISMAPHVLAMSATPIPRTLALALYGDMSLTHVCSPFFPDLHALKYKLP 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16162742 16187030 + Lsi04G011530.1 Lsi04g01153 661202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01153 873 Gene3D - 612 858 IPR027417 -
Lsi04g01153 873 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 668 857 IPR014001 -
Lsi04g01153 873 SMART ultradead3 650 871 IPR014001 -
Lsi04g01153 873 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 478 543 - -
Lsi04g01153 873 SUPERFAMILY Nucleic acid-binding proteins 220 413 IPR012340 -
Lsi04g01153 873 Pfam DEAD/DEAH box helicase 675 842 IPR011545 GO:0003676|GO:0005524
Lsi04g01153 873 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 21 416 - -
Lsi04g01153 873 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 605 857 - -
Lsi04g01153 873 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 21 416 - -
Lsi04g01153 873 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 605 857 - -
Lsi04g01153 873 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 478 543 - -
Lsi04g01153 873 CDD DEXHc_RecG 630 855 - -
Lsi04g01153 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 856 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01153 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - csv:101221994 707.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01153 Lsi-Chr4:16162742 Lsi09g00839 Lsi-Chr9:9645687 1.69E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01153 Lsi_Chr04 FPKM 51.221222 56.19968 37.882706 38.821358 26.328835 26.136847 24.426704 39.719814 38.964203 36.57909