Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01155 ATGCTGCAAACAATGGGGTTAAGAGAAGTGTTGCTGTTTTTGTCAATAACAATACTTGCAACTTCAAGTGCTGCTATGGATCAACAAACTTACATAATTCACATGGACACCACAAAGATGGCCACCACCAACAACCCTGAAAAATGGTACACAGCCATGATTGATTCACTCAATGAACTCTCGTCTCTGGATGACGAAAACAATGAAGAAGAAGCATCAAACCCTGCCGAGATTCTCTACGTCTACAAAACTACCATTTCAGGCAAGATTCTAAATATCAATCACCTTGATTCATTTTCAGGTTTTGCTGCAAAGCTCTCCACAAAAAACCTCCATTCTTTAAGCAAAATGCCTGGCTTTCTAGCAGCCACTCCAAATGAACTACTACAACTTCACACCACTTACTCCCCTCAGTTTCTGGGCCTACAAAGAGGCCATGGCCTTTGGAATTCCTCAAACTTAGCCTCTGATATAATTATTGGTTTGCTTGACACTGGTGTTTGGCCTGAGCATATAAGTTTTCGGGACAAGGGTCTGCCTCCTGTGCCCTCAAAATGGAAAGGCATTTGTCAAGTAGGCCCAAAGTTCTCACCTTCAAATTGTAACAAAAAGCTCATTGGAGCAAGAGCCTACATTAAAGGCTATGAGGCCGTCATCGGTAGATTGAACACAACAGGGACGTTTCGATCACCCCGAGACTCGGATGGTCACGGGACACACACGGCATCAACTGCTGCTGGAAATTCTGTAAACAGAGCAAGCTTTTATAGCCAAGGGATGGGAGTAGCCACTGGAATGAGGTTCACTTCAAGGATTGCAGCATACAAGGTATGTTGGCCAGAAGGGTGTGCCAGTGCCGATATTTTGGCAGCCATGGATCACGCCGTTGCCGACGGTGTTGATGTTCTATCAATCTCCTTGGGCGGTGGTTCTGGTATTTTTTACAGCGATGAAATCGCGATAGCTGCATTTGGGGCTATTCAAAATGGGGTTTTTGTGTCATGTTCAGCTGGTAATTCTGGCCCATTTATCTCAACTGTTGGTAATGTAGCACCATGGATCATGACAGTTGCTGCTAGTTACACTGATAGAACCTTCCCAACCACTATAAAGCTTGGAAATGGAAAAGTTTTTGAAGGCTCTTCTTTGTATTTTGGCAAGAACTTGAATGCACTCCCACTTTTTTATAACAATACTGCTGGTTATGGACAAGAAACAAATCTTTGCACTGCTGGTTCACTTGTCCCATCAATGGTAAAGGGAAAATTTGTTGTATGTGAAAGAGGAACAAACTCAAGAACTGAAAAAGGAGAGCAAGTGAAATTAGCTGGTGGAGCTGGTATGATTCTAATCAACACACAACTTGAAGGTGAAGAGCTTATAGCTGACCCTCATGTTTTGCCAGCCACTGCTGTTGGAGTTTCAGCTGGCAAAGCCATCATAGACTATATAGCTTCTTCGAAACATCGAGCTAAAGCTTCGATCATGTTCGAAGGGACTAAATATGGAAGCCGAGCGCCTAGAGTGGCTGCATTTTCTTCTCGAGGGCCAAGCTTTTTTGAACCATACGTGATAAAGCCAGACGTAACTGCACCTGGTGTTAATATATTGGCTGCTTGGCCGTCCATTGTGAGCCCAAGTGAGCTCAAGTCTGATAAAAGAAGAGTATTGTTCAATATCATTTCAGGGACTTCTATGTCTTGCCCTCATGTCAGTGGTTTAGCTGCATTGCTTAAATCAGCTCACAAGGATTGGTCGCCTGCCGCAATTAAATCGGCGCTCATGACAACAGCTTACGTTACTGACAACAAAAAGCATCTCATTTCCGACGTTGGTCGTGCTAGCGGTGGTCCTGCGGACCCTTTTGCGTTTGGTTCTGGCCATGTCGATCCTGAGAAAGCTTCCGATCCAGGGCTCATATACGATATTGCGCCCCAAGACTACATAAACTACTTGTGTAGCTTGAAGTATAACTCAACACAAATTGCTTTAGTTTCAAGAGGGAAATTCAGATGTCCATCAAGAAAAACATTTCTTCAGCCAGGAGACTTGAACTACCCTTCTTTTGCTGTGTTCATGAAGAAGGACAAGAATGTTACTATTACATTCCAGAGAACAGTGACAAATGTTGGTATCCCAAGAAGTGATTACACAGTTAAAATCAACAATCCAAAAGGAATAAGAATTACTGTAAAGCCTGAGAAGTTAAGTTTTGTGAGATTGGGAGAGAAGTTGAGTTACAAAGTGAGTTTTGTTGCATTGGGGGGAAAAGAAGCTTTGGATGAGTTTTCTCCTGGATCTTTGGAAGAGTTTTCTTTTGGATCTCTTGTTTGGAAGTCAGGAAAATATGTTGTTAGAAGTCCTATAGCAGTGACTTGGCAGTAG 2385 42.98 MLQTMGLREVLLFLSITILATSSAAMDQQTYIIHMDTTKMATTNNPEKWYTAMIDSLNELSSLDDENNEEEASNPAEILYVYKTTISGKILNINHLDSFSGFAAKLSTKNLHSLSKMPGFLAATPNELLQLHTTYSPQFLGLQRGHGLWNSSNLASDIIIGLLDTGVWPEHISFRDKGLPPVPSKWKGICQVGPKFSPSNCNKKLIGARAYIKGYEAVIGRLNTTGTFRSPRDSDGHGTHTASTAAGNSVNRASFYSQGMGVATGMRFTSRIAAYKVCWPEGCASADILAAMDHAVADGVDVLSISLGGGSGIFYSDEIAIAAFGAIQNGVFVSCSAGNSGPFISTVGNVAPWIMTVAASYTDRTFPTTIKLGNGKVFEGSSLYFGKNLNALPLFYNNTAGYGQETNLCTAGSLVPSMVKGKFVVCERGTNSRTEKGEQVKLAGGAGMILINTQLEGEELIADPHVLPATAVGVSAGKAIIDYIASSKHRAKASIMFEGTKYGSRAPRVAAFSSRGPSFFEPYVIKPDVTAPGVNILAAWPSIVSPSELKSDKRRVLFNIISGTSMSCPHVSGLAALLKSAHKDWSPAAIKSALMTTAYVTDNKKHLISDVGRASGGPADPFAFGSGHVDPEKASDPGLIYDIAPQDYINYLCSLKYNSTQIALVSRGKFRCPSRKTFLQPGDLNYPSFAVFMKKDKNVTITFQRTVTNVGIPRSDYTVKINNPKGIRITVKPEKLSFVRLGEKLSYKVSFVALGGKEALDEFSPGSLEEFSFGSLVWKSGKYVVRSPIAVTWQ 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16301953 16304675 - Lsi04G011550.1 Lsi04g01155 661204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01155 794 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 20 794 - -
Lsi04g01155 794 Gene3D Peptidase S8/S53 domain 157 648 IPR036852 GO:0004252|GO:0006508
Lsi04g01155 794 Pfam Peptidase inhibitor I9 30 132 IPR010259 -
Lsi04g01155 794 ProSiteProfiles Serine proteases, subtilase domain profile. 134 635 - -
Lsi04g01155 794 Pfam PA domain 399 480 IPR003137 -
Lsi04g01155 794 Pfam Fibronectin type-III domain 683 791 IPR041469 -
Lsi04g01155 794 CDD Peptidases_S8_3 129 599 IPR034197 -
Lsi04g01155 794 CDD PA_subtilisin_like 369 495 - -
Lsi04g01155 794 PRINTS Subtilisin serine protease family (S8) signature 155 174 IPR015500 -
Lsi04g01155 794 PRINTS Subtilisin serine protease family (S8) signature 233 246 IPR015500 -
Lsi04g01155 794 PRINTS Subtilisin serine protease family (S8) signature 562 578 IPR015500 -
Lsi04g01155 794 Gene3D - 363 502 - -
Lsi04g01155 794 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 89 IPR037045 -
Lsi04g01155 794 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 93 132 IPR037045 -
Lsi04g01155 794 SUPERFAMILY Subtilisin-like 131 639 IPR036852 GO:0004252|GO:0006508
Lsi04g01155 794 ProSitePatterns Serine proteases, subtilase family, serine active site. 563 573 IPR023828 -
Lsi04g01155 794 Pfam Subtilase family 156 613 IPR000209 GO:0006508|GO:0008236
Lsi04g01155 794 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 20 794 IPR045051 -
Lsi04g01155 794 Gene3D - 652 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01155 Lsi-Chr4:16301953 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi08g01526 Lsi-Chr8:23322442 Lsi04g01155 Lsi-Chr4:16301953 5.45E-147 dispersed
Lsi09g00345 Lsi-Chr9:3588571 Lsi04g01155 Lsi-Chr4:16301953 0 dispersed
Lsi04g01155 Lsi-Chr4:16301953 Lsi04g01156 Lsi-Chr4:16379761 3.79E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01155 - - csv:101222234 1279.23