Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01156 ATGCTTGCAATTTCAAGTGCTGCTGTTGATCAACAGACTTACATTATTCACATGGACACCACAAAGATGATCACCAACAACCCTGAACAATGTTTTCAAGACAAGGGTCTGCCCCCTGTGCCCTCAAAATGGAAAGGCATTTGCCAAGCAGGAGCAAAGTTCTCACCTTCAAATTGTAACAAAAAGCTCATTGGAGCAAGTGCCTATATTAAAGGCTACGAGGCCATCGTCGGTAGATTGAATGAAACAGGGACATTCCGATCGCCTCGAGACTCGGATGGGCACGGGACACACACGGCTTCGACTGCTGCTGGAAATATTGTAAACAAAGCAAGCTTAAATAACCAAGCCATGGGAGTAGCTACGGGAATGAGCTTCACTTCAAGAATCGCAGCATACAAAGTATGTTGGCCCCTAGGGTGTGCAAGTGCCGATATTCTGGCAGCCATGGACAGTGCCGTTGCCGATGGAGTCGATGTTCTATCACTGTCTTTGGGTGGTGGTGCTGGTTCTTTTTACAGAGATAACATTGCCATAGCTGCATTTGGTGCTATTCAAAATGGGGTTTTTGTGTCATGTTCAGCTGGTAATTCTGGCCCATCAACCTCAACTGTTGGTAATGCGGCCCCATGGATCATGACAGTTGCTGCTAGCTACACAGACAGAGCTTTCCCAACCACTGTAAAGCTTGGAAATGGACAAGTTTTTGAAGGCTCTTCTTTGTATGTTGGTAAGAACATAAATGAGCTCCCACTTGTTTATAACAATACTGCTGGTGATGGACAAGAAACAAATTTTTGCACAACTGGTTCACTTGACCCATCAAAGGTGAACGGAAAAATTGTGTTGTGTGAAAGAGGATTAAACTCAAGAACTGCAAAAGGAGAGCAAGTGAAATTAGCTGGAGGAGCTGGAATGATTCTAATCAACGCACAATTTGAAGGTGAAGAGCTTTTTGCTGACCCTCATGTTTTGCCAGCCACTACTCTTGGAGCTTCAGCTGGCAAAGTCATCTTAGACTATATAGCTTCCTCGGAAAGTCAAGCGAAAGCTTCGATCGCGTTCGAAGGGACCAAATATGGAAGTCGAGCACCGAGAGTGGCTGCATTTTCTTCTCGAGGGCCGAGCTTTGTTGGACCAGATGTGATAAAGCCAGATGTAACTGCACCTGGTGTTAATATATTGGCTGCTTGGCCGCCGATTGTGAGCCCAAGTGAGCTTGAGTCTGATAAAAGAAGAGTGTTGTTCAACATCATTTCAGGGACTTCTATGTCTTGCCCTCATGTTAGCGGTTTAGCTGCGTTGCTTAAATCAGCTCACAAGGATTGGTCGCCTGCTGCGGTTAAATCCGCGCTCATGACCACAGCTTACGTTACTGACAACAAAATGAGTCTCATTTCCGATGTCGGTGATGCTAGTGGTGGACCTGCAGACCCTTTTGCGTTTGGTTCTGGCCATGTCCATCCCGAGAAAGCTTCCGATCCAGGGCTCGTATACGATATCACGCCCCAAGACTACATAAACTACTTGTGTAGCTTGAAGTATAACTCCACACAAATTGCTTTAGTTTCAAGAGGGAAATTGACATGTTCATCAAAAAGAACATTTCTTCAGCCAGGAGACTTGAACTACCCTTCTTTCTCTGTGTTCATGAAGAAGAAGGCCAAAAATGTTAGTATTACATTTAAGAGAACAGTGACAAATGTTGGTATCCCAAGAAGTGATTACACTGTTAAAATCAACAATCCAAAAGGAATAACAGTTATTGTGAAGCCTGAGAAGTTAAGTTTTGGGAGCTTGGGAGAGAAGTTGAGTTACCAAGTGGGTTTTGTTGCATTGGGAGGAAAACAAGATTTAGGAGAGTTTTCTTTTGGATCTCTTGTTTGGGTCTCAGGAAAATATGCTGTTAGAAGTCCTATAGCAGTAACTTGGCAATAA 1938 44.12 MLAISSAAVDQQTYIIHMDTTKMITNNPEQCFQDKGLPPVPSKWKGICQAGAKFSPSNCNKKLIGASAYIKGYEAIVGRLNETGTFRSPRDSDGHGTHTASTAAGNIVNKASLNNQAMGVATGMSFTSRIAAYKVCWPLGCASADILAAMDSAVADGVDVLSLSLGGGAGSFYRDNIAIAAFGAIQNGVFVSCSAGNSGPSTSTVGNAAPWIMTVAASYTDRAFPTTVKLGNGQVFEGSSLYVGKNINELPLVYNNTAGDGQETNFCTTGSLDPSKVNGKIVLCERGLNSRTAKGEQVKLAGGAGMILINAQFEGEELFADPHVLPATTLGASAGKVILDYIASSESQAKASIAFEGTKYGSRAPRVAAFSSRGPSFVGPDVIKPDVTAPGVNILAAWPPIVSPSELESDKRRVLFNIISGTSMSCPHVSGLAALLKSAHKDWSPAAVKSALMTTAYVTDNKMSLISDVGDASGGPADPFAFGSGHVHPEKASDPGLVYDITPQDYINYLCSLKYNSTQIALVSRGKLTCSSKRTFLQPGDLNYPSFSVFMKKKAKNVSITFKRTVTNVGIPRSDYTVKINNPKGITVIVKPEKLSFGSLGEKLSYQVGFVALGGKQDLGEFSFGSLVWVSGKYAVRSPIAVTWQ 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16379761 16383269 - Lsi04G011560.1 Lsi04g01156 661205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01156 645 Pfam Fibronectin type-III domain 541 642 IPR041469 -
Lsi04g01156 645 Pfam Subtilase family 71 483 IPR000209 GO:0006508|GO:0008236
Lsi04g01156 645 CDD PA_subtilisin_like 227 347 - -
Lsi04g01156 645 SUPERFAMILY Subtilisin-like 60 497 IPR036852 GO:0004252|GO:0006508
Lsi04g01156 645 Gene3D Peptidase S8/S53 domain 29 506 IPR036852 GO:0004252|GO:0006508
Lsi04g01156 645 CDD Peptidases_S8_3 32 457 IPR034197 -
Lsi04g01156 645 SUPERFAMILY PA domain 249 343 IPR046450 -
Lsi04g01156 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 30 645 - -
Lsi04g01156 645 Gene3D - 221 360 - -
Lsi04g01156 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 645 IPR045051 -
Lsi04g01156 645 Pfam PA domain 251 336 IPR003137 -
Lsi04g01156 645 PRINTS Subtilisin serine protease family (S8) signature 91 104 IPR015500 -
Lsi04g01156 645 PRINTS Subtilisin serine protease family (S8) signature 420 436 IPR015500 -
Lsi04g01156 645 Gene3D - 510 644 - -
Lsi04g01156 645 ProSitePatterns Serine proteases, subtilase family, serine active site. 421 431 IPR023828 -
Lsi04g01156 645 ProSiteProfiles Serine proteases, subtilase domain profile. 1 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01156 Lsi-Chr4:16379761 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi04g01155 Lsi-Chr4:16301953 Lsi04g01156 Lsi-Chr4:16379761 3.79E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01156 - - csv:101210266 1060.83