Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01156 ATGCTTGCAATTTCAAGTGCTGCTGTTGATCAACAGACTTACATTATTCACATGGACACCACAAAGATGATCACCAACAACCCTGAACAATGTTTTCAAGACAAGGGTCTGCCCCCTGTGCCCTCAAAATGGAAAGGCATTTGCCAAGCAGGAGCAAAGTTCTCACCTTCAAATTGTAACAAAAAGCTCATTGGAGCAAGTGCCTATATTAAAGGCTACGAGGCCATCGTCGGTAGATTGAATGAAACAGGGACATTCCGATCGCCTCGAGACTCGGATGGGCACGGGACACACACGGCTTCGACTGCTGCTGGAAATATTGTAAACAAAGCAAGCTTAAATAACCAAGCCATGGGAGTAGCTACGGGAATGAGCTTCACTTCAAGAATCGCAGCATACAAAGTATGTTGGCCCCTAGGGTGTGCAAGTGCCGATATTCTGGCAGCCATGGACAGTGCCGTTGCCGATGGAGTCGATGTTCTATCACTGTCTTTGGGTGGTGGTGCTGGTTCTTTTTACAGAGATAACATTGCCATAGCTGCATTTGGTGCTATTCAAAATGGGGTTTTTGTGTCATGTTCAGCTGGTAATTCTGGCCCATCAACCTCAACTGTTGGTAATGCGGCCCCATGGATCATGACAGTTGCTGCTAGCTACACAGACAGAGCTTTCCCAACCACTGTAAAGCTTGGAAATGGACAAGTTTTTGAAGGCTCTTCTTTGTATGTTGGTAAGAACATAAATGAGCTCCCACTTGTTTATAACAATACTGCTGGTGATGGACAAGAAACAAATTTTTGCACAACTGGTTCACTTGACCCATCAAAGGTGAACGGAAAAATTGTGTTGTGTGAAAGAGGATTAAACTCAAGAACTGCAAAAGGAGAGCAAGTGAAATTAGCTGGAGGAGCTGGAATGATTCTAATCAACGCACAATTTGAAGGTGAAGAGCTTTTTGCTGACCCTCATGTTTTGCCAGCCACTACTCTTGGAGCTTCAGCTGGCAAAGTCATCTTAGACTATATAGCTTCCTCGGAAAGTCAAGCGAAAGCTTCGATCGCGTTCGAAGGGACCAAATATGGAAGTCGAGCACCGAGAGTGGCTGCATTTTCTTCTCGAGGGCCGAGCTTTGTTGGACCAGATGTGATAAAGCCAGATGTAACTGCACCTGGTGTTAATATATTGGCTGCTTGGCCGCCGATTGTGAGCCCAAGTGAGCTTGAGTCTGATAAAAGAAGAGTGTTGTTCAACATCATTTCAGGGACTTCTATGTCTTGCCCTCATGTTAGCGGTTTAGCTGCGTTGCTTAAATCAGCTCACAAGGATTGGTCGCCTGCTGCGGTTAAATCCGCGCTCATGACCACAGCTTACGTTACTGACAACAAAATGAGTCTCATTTCCGATGTCGGTGATGCTAGTGGTGGACCTGCAGACCCTTTTGCGTTTGGTTCTGGCCATGTCCATCCCGAGAAAGCTTCCGATCCAGGGCTCGTATACGATATCACGCCCCAAGACTACATAAACTACTTGTGTAGCTTGAAGTATAACTCCACACAAATTGCTTTAGTTTCAAGAGGGAAATTGACATGTTCATCAAAAAGAACATTTCTTCAGCCAGGAGACTTGAACTACCCTTCTTTCTCTGTGTTCATGAAGAAGAAGGCCAAAAATGTTAGTATTACATTTAAGAGAACAGTGACAAATGTTGGTATCCCAAGAAGTGATTACACTGTTAAAATCAACAATCCAAAAGGAATAACAGTTATTGTGAAGCCTGAGAAGTTAAGTTTTGGGAGCTTGGGAGAGAAGTTGAGTTACCAAGTGGGTTTTGTTGCATTGGGAGGAAAACAAGATTTAGGAGAGTTTTCTTTTGGATCTCTTGTTTGGGTCTCAGGAAAATATGCTGTTAGAAGTCCTATAGCAGTAACTTGGCAATAA 1938 44.12 MLAISSAAVDQQTYIIHMDTTKMITNNPEQCFQDKGLPPVPSKWKGICQAGAKFSPSNCNKKLIGASAYIKGYEAIVGRLNETGTFRSPRDSDGHGTHTASTAAGNIVNKASLNNQAMGVATGMSFTSRIAAYKVCWPLGCASADILAAMDSAVADGVDVLSLSLGGGAGSFYRDNIAIAAFGAIQNGVFVSCSAGNSGPSTSTVGNAAPWIMTVAASYTDRAFPTTVKLGNGQVFEGSSLYVGKNINELPLVYNNTAGDGQETNFCTTGSLDPSKVNGKIVLCERGLNSRTAKGEQVKLAGGAGMILINAQFEGEELFADPHVLPATTLGASAGKVILDYIASSESQAKASIAFEGTKYGSRAPRVAAFSSRGPSFVGPDVIKPDVTAPGVNILAAWPPIVSPSELESDKRRVLFNIISGTSMSCPHVSGLAALLKSAHKDWSPAAVKSALMTTAYVTDNKMSLISDVGDASGGPADPFAFGSGHVHPEKASDPGLVYDITPQDYINYLCSLKYNSTQIALVSRGKLTCSSKRTFLQPGDLNYPSFSVFMKKKAKNVSITFKRTVTNVGIPRSDYTVKINNPKGITVIVKPEKLSFGSLGEKLSYQVGFVALGGKQDLGEFSFGSLVWVSGKYAVRSPIAVTWQ 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16379761 16383269 - Lsi04G011560.1 Lsi04g01156 661205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01156 645 Pfam Fibronectin type-III domain 541 642 IPR041469 -
Lsi04g01156 645 Pfam Subtilase family 71 483 IPR000209 GO:0006508|GO:0008236
Lsi04g01156 645 CDD PA_subtilisin_like 227 347 - -
Lsi04g01156 645 SUPERFAMILY Subtilisin-like 60 497 IPR036852 GO:0004252|GO:0006508
Lsi04g01156 645 Gene3D Peptidase S8/S53 domain 29 506 IPR036852 GO:0004252|GO:0006508
Lsi04g01156 645 CDD Peptidases_S8_3 32 457 IPR034197 -
Lsi04g01156 645 SUPERFAMILY PA domain 249 343 IPR046450 -
Lsi04g01156 645 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 30 645 - -
Lsi04g01156 645 Gene3D - 221 360 - -
Lsi04g01156 645 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 645 IPR045051 -
Lsi04g01156 645 Pfam PA domain 251 336 IPR003137 -
Lsi04g01156 645 PRINTS Subtilisin serine protease family (S8) signature 91 104 IPR015500 -
Lsi04g01156 645 PRINTS Subtilisin serine protease family (S8) signature 420 436 IPR015500 -
Lsi04g01156 645 Gene3D - 510 644 - -
Lsi04g01156 645 ProSitePatterns Serine proteases, subtilase family, serine active site. 421 431 IPR023828 -
Lsi04g01156 645 ProSiteProfiles Serine proteases, subtilase domain profile. 1 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01156 - - - csv:101210266 1060.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01156 Lsi-Chr4:16379761 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi04g01155 Lsi-Chr4:16301953 Lsi04g01156 Lsi-Chr4:16379761 3.79E-07 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01155 . 22 794 Subtilisin-like Serine Gene Family AT1G01900 52.5 4.7e-224 774.6
Lsi04g01156 . 32 645 Subtilisin-like Serine Gene Family AT1G01900 59.7 1.2e-198 690.3
Lsi05g01054 . 28 769 Subtilisin-like Serine Gene Family AT1G04110 68.7 5.3e-313 1070.1
Lsi04g01764 . 77 807 Subtilisin-like Serine Gene Family AT1G20150 51.9 1.6e-216 749.6
Lsi04g01764 . 48 560 Subtilisin-like Serine Gene Family AT1G20160 60.7 7.8e-173 604.0
Lsi04g00924 . 9 215 Subtilisin-like Serine Gene Family AT1G20160 52.1 3.9e-55 213.0
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT1G20160 51.4 6.7e-39 159.1
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32940 51.5 2.4e-185 646.0
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32950 51.9 2.8e-186 649.0
Lsi07g00238 . 39 737 Subtilisin-like Serine Gene Family AT1G32960 51.0 2.1e-195 679.5
Lsi02g01071 . 13 721 Subtilisin-like Serine Gene Family AT1G62340 54.1 1.3e-219 760.0
Lsi07g01431 . 26 764 Subtilisin-like Serine Gene Family AT2G04160 57.6 1.9e-249 859.0
Lsi07g01435 . 2 765 Subtilisin-like Serine Gene Family AT2G04160 54.0 1.1e-236 816.6
Lsi02g01177 . 3 650 Subtilisin-like Serine Gene Family AT2G04160 54.4 4.4e-198 688.3
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT2G04160 57.5 4.6e-195 678.3
Lsi07g01432 . 2 353 Subtilisin-like Serine Gene Family AT2G04160 52.3 3.3e-100 363.2
Lsi06g00340 . 29 768 Subtilisin-like Serine Gene Family AT2G05920 73.7 0.0e+00 1101.7
Lsi01g00922 . 25 761 Subtilisin-like Serine Gene Family AT2G05920 55.7 6.0e-232 800.8
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT2G05920 57.2 2.9e-218 755.4
Lsi05g01289 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 52.1 3.0e-215 745.3
Lsi02g02892 . 30 761 Subtilisin-like Serine Gene Family AT2G05920 53.5 2.8e-213 738.8
Lsi10g00488 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.0 1.3e-205 713.4
Lsi02g02862 . 33 786 Subtilisin-like Serine Gene Family AT2G05920 51.3 3.8e-202 701.8
Lsi04g01156 . 30 644 Subtilisin-like Serine Gene Family AT2G05920 51.0 6.9e-164 574.7
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT2G05920 53.0 2.3e-42 171.0
Lsi11g00788 CCT 34 835 Subtilisin-like Serine Gene Family AT2G19170 82.1 0.0e+00 1342.4
Lsi02g02892 . 8 768 Subtilisin-like Serine Gene Family AT3G14067 64.8 8.7e-287 983.0
Lsi01g00922 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.1e-223 773.5
Lsi06g00340 . 28 766 Subtilisin-like Serine Gene Family AT3G14067 54.3 2.4e-220 762.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT3G14067 52.9 3.0e-202 702.2
Lsi02g02862 . 36 794 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1205.7
Lsi10g00488 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.5 1.8e-244 842.4
Lsi01g00922 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.3 2.8e-216 748.8
Lsi05g01289 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.3 1.1e-212 736.9
Lsi06g00340 . 32 762 Subtilisin-like Serine Gene Family AT3G14240 51.3 1.3e-210 729.9
Lsi02g02892 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 50.9 6.6e-210 727.6
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT3G14240 51.9 2.2e-197 686.0
Lsi04g01156 . 28 645 Subtilisin-like Serine Gene Family AT3G14240 53.1 1.8e-170 596.7
Lsi10g01083 . 13 735 Subtilisin-like Serine Gene Family AT3G46840 51.4 1.8e-196 682.9
Lsi10g01083 . 13 731 Subtilisin-like Serine Gene Family AT3G46850 51.4 2.5e-198 689.1
Lsi04g01157 . 9 515 Subtilisin-like Serine Gene Family AT4G00230 52.1 1.8e-162 569.7
Lsi04g01158 . 16 505 Subtilisin-like Serine Gene Family AT4G00230 55.1 7.2e-156 547.7
Lsi04g01159 . 63 451 Subtilisin-like Serine Gene Family AT4G00230 65.0 3.1e-143 505.8
Lsi04g00925 . 1 468 Subtilisin-like Serine Gene Family AT4G00230 51.1 6.1e-131 464.9
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10510 51.2 8.6e-188 654.1
Lsi07g00238 . 39 732 Subtilisin-like Serine Gene Family AT4G10520 50.3 4.6e-192 668.3
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10550 51.2 3.2e-190 662.1
Lsi02g00661 . 21 346 Subtilisin-like Serine Gene Family AT4G21320 67.0 2.5e-122 435.3
Lsi03g00103 . 46 338 Subtilisin-like Serine Gene Family AT4G26330 54.9 2.7e-96 350.1
Lsi11g00788 CCT 29 835 Subtilisin-like Serine Gene Family AT4G30020 81.6 0.0e+00 1335.1
Lsi10g00488 . 25 772 Subtilisin-like Serine Gene Family AT4G34980 75.2 0.0e+00 1155.2
Lsi02g02862 . 35 794 Subtilisin-like Serine Gene Family AT4G34980 53.8 3.3e-230 795.0
Lsi01g00922 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.1 2.4e-212 735.7
Lsi05g01289 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 51.0 9.1e-212 733.8
Lsi06g00340 . 28 762 Subtilisin-like Serine Gene Family AT4G34980 50.9 1.0e-207 720.3
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT4G34980 50.5 1.2e-190 663.7
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT4G34980 51.6 5.0e-53 206.5
Lsi07g01433 . 120 293 Subtilisin-like Serine Gene Family AT4G34980 51.7 1.4e-39 161.8
Lsi01g01238 . 1 416 Subtilisin-like Serine Gene Family AT5G03620 51.4 1.8e-135 479.9
Lsi04g00925 . 4 467 Subtilisin-like Serine Gene Family AT5G03620 53.6 1.5e-129 460.3
Lsi04g01159 . 63 449 Subtilisin-like Serine Gene Family AT5G03620 53.7 1.9e-105 380.2
Lsi06g00869 . 291 1037 Subtilisin-like Serine Gene Family AT5G19660 79.4 0.0e+00 1239.2
Lsi01g00203 . 173 424 Subtilisin-like Serine Gene Family AT5G45640 53.5 5.8e-70 262.7
Lsi01g00203 . 175 424 Subtilisin-like Serine Gene Family AT5G45650 55.7 2.7e-73 273.9
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G45650 50.9 5.2e-53 206.5
Lsi05g01289 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 74.0 0.0e+00 1161.0
Lsi01g00922 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.3 4.4e-230 794.7
Lsi06g00340 . 27 766 Subtilisin-like Serine Gene Family AT5G51750 51.1 7.8e-219 757.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT5G51750 54.2 1.3e-213 740.0
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G51750 51.6 2.9e-56 217.2
Lsi07g01433 . 120 295 Subtilisin-like Serine Gene Family AT5G51750 50.6 1.0e-45 182.2
Lsi10g01083 . 28 733 Subtilisin-like Serine Gene Family AT5G58830 51.0 2.4e-182 636.0
Lsi10g01083 . 28 551 Subtilisin-like Serine Gene Family AT5G58840 53.7 1.6e-146 516.5
Lsi10g01083 . 9 733 Subtilisin-like Serine Gene Family AT5G59090 50.7 2.7e-189 659.1
Lsi10g01083 . 10 731 Subtilisin-like Serine Gene Family AT5G59100 51.0 9.4e-198 687.2
Lsi10g01083 . 22 731 Subtilisin-like Serine Gene Family AT5G59120 51.4 2.0e-192 669.5
Lsi10g01083 . 36 730 Subtilisin-like Serine Gene Family AT5G59190 51.9 2.5e-192 669.1
Lsi04g00925 . 1 644 Subtilisin-like Serine Gene Family AT5G59190 50.6 1.2e-173 607.1
Lsi07g01435 . 1 765 Subtilisin-like Serine Gene Family AT5G59810 55.5 2.7e-235 812.0
Lsi07g01431 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 54.9 2.3e-234 808.9
Lsi02g01177 . 1 653 Subtilisin-like Serine Gene Family AT5G59810 59.3 1.4e-220 763.1
Lsi07g01437 . 300 924 Subtilisin-like Serine Gene Family AT5G59810 50.2 8.7e-194 674.1
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT5G59810 53.1 2.8e-176 615.9
Lsi02g01178 . 23 610 Subtilisin-like Serine Gene Family AT5G59810 54.9 5.0e-173 605.1
Lsi07g01432 . 1 353 Subtilisin-like Serine Gene Family AT5G59810 52.2 2.2e-104 377.1
Lsi07g01436 . 2 287 Subtilisin-like Serine Gene Family AT5G59810 52.0 1.2e-86 318.2
Lsi07g01433 . 3 291 Subtilisin-like Serine Gene Family AT5G59810 51.2 2.4e-79 293.9
Lsi01g00922 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Lsi08g01515 . 1 701 Subtilisin-like Serine Gene Family AT5G67360 66.7 2.6e-275 944.9
Lsi06g00340 . 32 767 Subtilisin-like Serine Gene Family AT5G67360 56.6 4.1e-233 804.7
Lsi05g01289 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.8 1.2e-227 786.6
Lsi02g02892 . 8 760 Subtilisin-like Serine Gene Family AT5G67360 55.8 4.4e-227 784.6
Lsi10g00488 . 7 767 Subtilisin-like Serine Gene Family AT5G67360 51.2 1.3e-210 729.9
Lsi02g02862 . 36 789 Subtilisin-like Serine Gene Family AT5G67360 51.8 2.4e-209 725.7
Lsi04g01156 . 32 644 Subtilisin-like Serine Gene Family AT5G67360 50.7 2.4e-164 576.2
Lsi07g01436 . 76 285 Subtilisin-like Serine Gene Family AT5G67360 51.2 3.7e-56 216.9
Lsi07g01433 . 120 296 Subtilisin-like Serine Gene Family AT5G67360 54.7 2.8e-48 190.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002199 1 5 2 2 1 2 1 2 2 0 2 2 2 2 2 1 2 2 1 2 2 1 4 3 2 2 1 3 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01156 Lsi_Chr04 FPKM 0.195205 0.274982 0.919822 0.716213 0.472695 0.872533 0.598643 0.461628 0.558383 0.246555