Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01157 ATGTCGATATCAAAATCTTCTCGAGTTTTCATCTTCATTCTTTTCTTCGTTGTTGGATGCATTGCTGCCATAGAAATCGACGAGGACAAGAAACATTTCATTGTTTTCCTGGAGAGTAGACCTGCTATTTTAAATGAGGTTGATGCAGTAGAAACACATCTCAATGTTCTCATGTCAGTGAAGGAAAGTCATGTGGAAGCAAAAGAGTCGATGGTCTATAGTTACACAAAAAACTTTAATGCATTTGCTGCGAAGCTTACTGAGGAGGAGGCCAAAAAATTGTCAGAGAGGGGAGATGTGCATCATGTGATCCCAAACAAGTATAGAAAGCTACAAACAACAAGATCTTGGGACTTCCTTGGATTTCCTCCCACTGCAAGAAGAAAAACCAGACAGGAGAGTGACATTATTGTCGGTTTATTTGATACTGGGATTACTCCAACGGCCGATAGCTTTAAAGATGATGGGTTTGGTCCTCCACCCTCTAAATGGAAAGGCACTTGTCTTCACTTTGCAAATTTCACTGGCTGCAACAACAAACTCATTGGAGCAAGATATTTCAAACTCGACAGCCTCCCCGACCCCCTTGACATTCTGTCTCCAGTAGACGTTAACGGCCACGGCACACACACATCCTCAACAGCCACGGGCAATGCAATCGCCGGAGCCAGCCTGTCTGGTCTGGCTCAAGGCACTGCCCGTGGCGGCGTGCCATCGGCCAGAGTTGCCATGTACAAGGTCTGCTGGACTAGCACCGGATGCTCCGATATGGATCTTCTGGCTGCCTTCGACGCCGCCATAGAGGACGGCGTCGATGTCATTTCAATATCGATCGCTGGCATTGGCTTCGGCAATTACACTGAGGACCCGATCTCCATCGGCGCATTTCATGCCATGAAGAAGGGCATCATCACCGTGACAGCGGCCGGCAACAACGGCCCGAGTGCTGGCACCATTGTGAACCACGCGCCGTGGATATTGACGGTTGCTGCCAGTTCAATTGATCGGAAATTTATCAGCCCATTGGAGTTGGGCAATGGGATGAACATCTCTGGAGTAGGAATAAACCTATTCAATCCACAGCAAAAAATGTACAATTTAGTGAGTGGAGGTGATGCGGCAAAGAACATAGAAAGCAAAGATAATGCAATGTTTTGTGTAGAGGGCTCACTTGATCCAAACAAGGTCAAAGACAACCTTGTTTTCTGCAAATTGATGACTTGGGGAGCTGATCATGTTGTCAAATCAATTGGTGCTAATGGTGCTATCCTTCAAAGTGATCAGTTTCTTGACAATACTGATATCTTCATGGCCCCTTCCACCTTGCCGGACATAGCAGCGCCAGGAGTGGACATATTGGCCGGTTACACACCACTAAAGTCATTGACAGGGTTAAAGGGTGACACCCAATTCTCCAAATTCACACTCATGTCTGGCACTTCCATGGCTTGCCCCCACGTAGCCGCCGCCGCCGCCTACGTCAAGTCTTTCCACCCTCTTTGGTCTCCCGCCGCCATTAGATCCGCCTTGCTCACCACCGCGAGACCAATTAGTCGACGACTAAACCCTGATGGAGAATTCGGGTACGGTGCTGGTAACCTAAATCCAGCTAAAGCTACAAACCCCGGCCTAATCTACGACCTTAACGATATGTCGTACGCTCAATTCCTTTGCAGCGAAGGTTACACTGGTTCTTCAATTGCAATCCTTACGGGAACCAAATCTATAAATTGCTCCACAATAATCCCAGGCCAAGGCCAGGACTCTCTTAATTACCCAACCTTTCAACTAAGCCTCAAAAGCACCCGACAACCAACGACCGCTGTGTTCTGGCGGGAAGTAACTAATGTCGGTCGTCCTATCTCTGTATACAATGCGACGATCAGGGCTCCCCCTGGGGTGGAGATAATGATGGTGCCGGCAACTTTATCGTTCTCACAGCTTTTGCAAAAGCAGAGGTTTAAGGTTGTTGTGAAAGTTGGTCCTTTGTCGTCGACAAACATGGTTTCGGGTTGGATTGCTTGGGTTGATGCTCGACATGTTGTGAGAAGTCCGATTGTTGTCTATAGCCCGTGA 2076 47.83 MSISKSSRVFIFILFFVVGCIAAIEIDEDKKHFIVFLESRPAILNEVDAVETHLNVLMSVKESHVEAKESMVYSYTKNFNAFAAKLTEEEAKKLSERGDVHHVIPNKYRKLQTTRSWDFLGFPPTARRKTRQESDIIVGLFDTGITPTADSFKDDGFGPPPSKWKGTCLHFANFTGCNNKLIGARYFKLDSLPDPLDILSPVDVNGHGTHTSSTATGNAIAGASLSGLAQGTARGGVPSARVAMYKVCWTSTGCSDMDLLAAFDAAIEDGVDVISISIAGIGFGNYTEDPISIGAFHAMKKGIITVTAAGNNGPSAGTIVNHAPWILTVAASSIDRKFISPLELGNGMNISGVGINLFNPQQKMYNLVSGGDAAKNIESKDNAMFCVEGSLDPNKVKDNLVFCKLMTWGADHVVKSIGANGAILQSDQFLDNTDIFMAPSTLPDIAAPGVDILAGYTPLKSLTGLKGDTQFSKFTLMSGTSMACPHVAAAAAYVKSFHPLWSPAAIRSALLTTARPISRRLNPDGEFGYGAGNLNPAKATNPGLIYDLNDMSYAQFLCSEGYTGSSIAILTGTKSINCSTIIPGQGQDSLNYPTFQLSLKSTRQPTTAVFWREVTNVGRPISVYNATIRAPPGVEIMMVPATLSFSQLLQKQRFKVVVKVGPLSSTNMVSGWIAWVDARHVVRSPIVVYSP 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16438544 16447366 - Lsi04G011570.1 Lsi04g01157 661206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01157 691 PRINTS Subtilisin serine protease family (S8) signature 133 152 IPR015500 -
Lsi04g01157 691 PRINTS Subtilisin serine protease family (S8) signature 203 216 IPR015500 -
Lsi04g01157 691 PRINTS Subtilisin serine protease family (S8) signature 478 494 IPR015500 -
Lsi04g01157 691 Pfam Peptidase inhibitor I9 45 111 IPR010259 -
Lsi04g01157 691 ProSitePatterns Serine proteases, subtilase family, serine active site. 479 489 IPR023828 -
Lsi04g01157 691 Gene3D - 335 438 - -
Lsi04g01157 691 CDD Peptidases_S8_3 110 514 IPR034197 -
Lsi04g01157 691 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 112 IPR037045 -
Lsi04g01157 691 ProSiteProfiles Serine proteases, subtilase domain profile. 116 540 - -
Lsi04g01157 691 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lsi04g01157 691 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 33 442 - -
Lsi04g01157 691 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 443 689 - -
Lsi04g01157 691 Pfam Subtilase family 134 530 IPR000209 GO:0006508|GO:0008236
Lsi04g01157 691 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 442 IPR045051 -
Lsi04g01157 691 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 443 689 IPR045051 -
Lsi04g01157 691 SUPERFAMILY Subtilisin-like 111 544 IPR036852 GO:0004252|GO:0006508
Lsi04g01157 691 Gene3D Peptidase S8/S53 domain 135 334 IPR036852 GO:0004252|GO:0006508
Lsi04g01157 691 Gene3D Peptidase S8/S53 domain 442 553 IPR036852 GO:0004252|GO:0006508
Lsi04g01157 691 Pfam Fibronectin type-III domain 590 688 IPR041469 -
Lsi04g01157 691 CDD PA_subtilisin_like 342 457 - -
Lsi04g01157 691 Gene3D - 557 690 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01239 Lsi-Chr1:10563897 Lsi04g01157 Lsi-Chr4:16438544 9.51E-46 dispersed
Lsi03g01911 Lsi-Chr3:30472760 Lsi04g01157 Lsi-Chr4:16438544 1.03E-94 dispersed
Lsi03g01912 Lsi-Chr3:30477424 Lsi04g01157 Lsi-Chr4:16438544 5.60E-62 dispersed
Lsi04g01157 Lsi-Chr4:16438544 Lsi04g01159 Lsi-Chr4:16631809 1.23E-23 dispersed
Lsi04g01157 Lsi-Chr4:16438544 Lsi04g01158 Lsi-Chr4:16550162 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01157 - - bhj:120080987 1154.81