Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01158 ATGATTTATATTATATTGACAACTCTAGTTAAGTATGCTATTTGCAGTCATGTGGAAGCAAAAGAGTCGATGGTCTATAGTTACACAAAAAACTTTAATGCATTTGCTGCGAAGCTTACTGAGGAGGAGGCCAAAAAATTGTCAGAGAGGGGAGATGTGCATCATGTGATCCCAAACAAGTATAGAAAGCTACAAACAACAAGATCTTGGGACTTCCTTGGATTTCCTCCCACTGCAAGAAGAAAAACCAGACAGGAGAGTGACATTATTGTCGGTTTATTTGATACTGGAATTACTCCAACGGCCGATAGCTTTAAAGATGATGGGTTTGGTCCTCCACCCTCCAAATGGAAAGGCACTTGTCTTCACTTTGCAAATTTCACTGGCTGCAACAACAAACTCATCGGAGCAAGATATTTCAAGCTCGACGGCGTCCCCGATCCCCTCGACATTCTGTCGCCAATAGACGTTAACGGCCACGGCACACACACGTCTTCAATAGCCACCGGCAATGCAATCGCTGGAGCCAGCCTGTCTGGCTTGGCTCAAGGAACTGCCCGTGGCGGCGTACCATCGGCCAGAGTTGCCATGTACAAGGTCTGCTGGACTAGCACCGGATGCTCCGATATGGATCTTCTGGCTGCCTTCGACGCTGCCATAGAGGACGGCGTCGATGTCATTTCAATATCGATCGCTGGCATTGGCTTCGGCAATTACACTGAGGACCCGATCTCCATCGGCGCATTTCATGCCATGAAGAAGGGCATCATCACCGTGACAGCGGCTGGCAACAACGGCCCGAGTGCCGGCACCATTGTGAACCACGCGCCGTGGATATTGACGGTTGCTGCCAGTTCAATTGATCGGAAATTTATCAGCCCATTGGAGTTGGGCAATGGGATGAACATCTCTGGAGTAGGAATAAACCTATTCAATCCACAGCAAAAAATGTACAATTTAGTGAGTGGAGGTGATGTAGCAAAGAACATAGAAAGCAAAGATAATGCAATGTTTTGTGTAGAGGGCTCACTTGATCCAAACAAGGTCAAAGACAACCTTGTTTTCTGCAAATTGATGACTTGGGGAGCTGATTATGTTGTCAAATCAATTGGTGCTAATGGTGCTATCCTTCAAGGTGATCAGTTTCTTGACAATACTGACATCTTCATGGCCCCTTCCACCTTGAACACCAACGGCAGTGATCTACAGAACAAGACAACTCAAAGCAATAGCTCCAACGGTAGCTTCCTTCTCGTCCAGAGGCCCAAATCCAGGCTCCACCCGCATTCTAAAGACATAGCAGCTCCAGGAATGGACATATTGGCTGGTTACACACCACTAAAGTCACTGACTGGACTAAAGGGTGACACCCAATTCTCCAAATTCACACTCATGTCCGGCACTTCCATGGCTTGCCCCCACGTTGCCGTCGCCACCACCGCCTACGTCAAGTCTTTCCACCCACTTTGGTCTCCCGCCGCCATTAGATCCGCCTTGCTCACCACAGCTAAAGCCACAAACCCCGGCCTAATCTACGACCTCAACGATATGTCGTACATTCAATTCCTTTGCAGCGAAGGTTATACTGGTTCTTTGATTGCAATCCTCACCGGAACCAAATCTATAAATTGCTCCACAATAATTCCTGGCCAAGGCCAAGACTCTCTCAATTACCCAACCTTTCAACTAAGCCTTAAAAGCACCCGACAACCAACGACCGTCGTGTTCTGA 1731 47.72 MIYIILTTLVKYAICSHVEAKESMVYSYTKNFNAFAAKLTEEEAKKLSERGDVHHVIPNKYRKLQTTRSWDFLGFPPTARRKTRQESDIIVGLFDTGITPTADSFKDDGFGPPPSKWKGTCLHFANFTGCNNKLIGARYFKLDGVPDPLDILSPIDVNGHGTHTSSIATGNAIAGASLSGLAQGTARGGVPSARVAMYKVCWTSTGCSDMDLLAAFDAAIEDGVDVISISIAGIGFGNYTEDPISIGAFHAMKKGIITVTAAGNNGPSAGTIVNHAPWILTVAASSIDRKFISPLELGNGMNISGVGINLFNPQQKMYNLVSGGDVAKNIESKDNAMFCVEGSLDPNKVKDNLVFCKLMTWGADYVVKSIGANGAILQGDQFLDNTDIFMAPSTLNTNGSDLQNKTTQSNSSNGSFLLVQRPKSRLHPHSKDIAAPGMDILAGYTPLKSLTGLKGDTQFSKFTLMSGTSMACPHVAVATTAYVKSFHPLWSPAAIRSALLTTAKATNPGLIYDLNDMSYIQFLCSEGYTGSLIAILTGTKSINCSTIIPGQGQDSLNYPTFQLSLKSTRQPTTVVF 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16550162 16557923 - Lsi04G011580.1 Lsi04g01158 661207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01158 576 SUPERFAMILY Subtilisin-like 64 508 IPR036852 GO:0004252|GO:0006508
Lsi04g01158 576 Gene3D - 288 400 - -
Lsi04g01158 576 Pfam Subtilase family 87 505 IPR000209 GO:0006508|GO:0008236
Lsi04g01158 576 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 16 571 IPR045051 -
Lsi04g01158 576 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 16 571 - -
Lsi04g01158 576 ProSiteProfiles Serine proteases, subtilase domain profile. 69 542 - -
Lsi04g01158 576 CDD PA_subtilisin_like 295 388 - -
Lsi04g01158 576 PRINTS Subtilisin serine protease family (S8) signature 156 169 IPR015500 -
Lsi04g01158 576 PRINTS Subtilisin serine protease family (S8) signature 466 482 IPR015500 -
Lsi04g01158 576 PRINTS Subtilisin serine protease family (S8) signature 86 105 IPR015500 -
Lsi04g01158 576 Pfam Peptidase inhibitor I9 19 64 IPR010259 -
Lsi04g01158 576 CDD Peptidases_S8_3 63 503 IPR034197 -
Lsi04g01158 576 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 5 65 IPR037045 -
Lsi04g01158 576 Gene3D Peptidase S8/S53 domain 88 287 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01158 Lsi-Chr4:16550162 Lsi04g00925 Lsi-Chr4:9510161 6.55E-157 dispersed
Lsi04g01157 Lsi-Chr4:16438544 Lsi04g01158 Lsi-Chr4:16550162 0 tandem
Lsi04g01158 Lsi-Chr4:16550162 Lsi04g01159 Lsi-Chr4:16631809 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01158 - - bhj:120080987 927.546