Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01159 ATGTCGATATCGAAATCTTCTCGTCTTCTCGTCTTTATTCTCTTCTTCGTCGTAGGATGCGTTGCTGCCTTAGACGTCGACGAGGAAAAGAATCATTGCATTGTTTTTCTGGAAAATAAGCCTATTTTAAATGAGGTTGATGCAGTAGAAACACATCTAAATGTACTCATGTCAGTGAAGGAAAGAAAACTCATCGGAGCAAGATATTTTAAGCTCGACGGCAGCCCCGATCCTCTCGACATCTTGTCACCGGTAGATACTGATGGCCACGGCACGCACACATCATCAACAGCGACGGGCAATGCAGTTGCTGGAGCCAGCCTCTCCAGTCTGGCCGAAGGAACTGCCCGTGGAGGCGTGCCGTCTGCGAGAGTTGCCATGTATAAGGTCTGCTGGGCTAGTAGCGGGTGCTCCGATATGGATATTCTGGCCGCCTTCGACTCTGCCATACAGGACGGCGTTGATGTCATTTCGATATCGATTGGTGGTGGGGCCTTCAACAATTACTCCGATGACTCGATCTCCATCGGCGCATTTCATGCCATGAAGAAGGGCATCATCACCGTGACCTCCGCCGGCAACAGTGGTCCGACGGCTGGCAGTGTCGTCAACCACGCTCCGTGGATTATGACGGTTGCTGCCAGTGCGATTGATCGGAAATTTATCAGCCCATTAGAGTTGGGCAATGGGAAGAACATCTCTGGAGTAGGGATAAACATCTTCAATCCAAAGCAAAAGATGTACCCATTAGTGAGTGGAGGGGATGTGGCAAGGAACTCAGAAAGCAAAGACAGTGCAAGCTATTGTGAAGAGGACTCACTTGATCCAACCAAAGTAAAAGGCAGCCTTGTTTTCTGCAAATTTATGATTTGGGGAGCTGATTCTGTTATCAAATCCATTGGTGCTAATGGTGTTATCATTCAAACTGATCAATTTCTTGACAATGCTGATATCTTTATGGCCCCTGCTACCATGGTTAGCAGCTCTATTGGTACTACTATTCACACCTACATCAAGTCCACCAGAACACCAACGGCTGTAATATACAAAACAAGACAACTCAAAGCAACAGCTCCAATGGTAGCTTCCTTCTCATCCAGAGGCCCAAATCCAGGCTCCACCCGCATTCTAAAGCCGGACATTGCAGCGCCAGGAGTGGACATATTGGCGGGTTACACGCCACTGAAGTCATTGACAGGGCAAAAGGGTGACACCCAGTTCTCCAAATTCACACTCATGTCTGGTACTTCCATGGCATGCCCTCATGTTGCCGCCGCCGCCGCCTATGTCAAGTCTTTTCACCCTCTTTGGTCTCCCGCCGCCATTAGATCCGCCTTGCTCACGACCGCGAAACCGATAAGCCGACGACTAAATCCAGACGGCGAATTTGCATATGGCGCTGGCAATCTGAATCCATCAAGAGCCATAAGTCCTGGCCTAATCTACGATCTCAATGAAATGTCATACATTCAATTCCTTTGCAGCGAAGGCTACACCGGATCTTCAATCGCCGTCCTCGCTGGAACTAAATCCATAAATTGCTCCACTCTAATCCCCGGCCAAGGACATGACTCTCTCAATTATCCAACCTTTCAACTCAGCCTCAAAAGCACCCGACGACCGACGACCACAACGTTTCGACGACGAGTCACTAACGTGGCCCACCCGGTCTCTGTTTATAATGTCACCATTAAGGCTCCTCCTGGGATGGAGATCACGGTTACGCCGACCACTCTGTCATTCTCACGGTTGCTGCAGAAGAAGAGTTTTAAGGTTGTTGTGAAGGCAAGTCCTTTGTTGTCCGGGAAAATGGTGTCGGGTTCGCTTGCTTGGGTTGGTGCTCAACATGTTGTGAGAAGTCCTATTGTTTTTTACAGCCCATGA 1884 48.99 MSISKSSRLLVFILFFVVGCVAALDVDEEKNHCIVFLENKPILNEVDAVETHLNVLMSVKERKLIGARYFKLDGSPDPLDILSPVDTDGHGTHTSSTATGNAVAGASLSSLAEGTARGGVPSARVAMYKVCWASSGCSDMDILAAFDSAIQDGVDVISISIGGGAFNNYSDDSISIGAFHAMKKGIITVTSAGNSGPTAGSVVNHAPWIMTVAASAIDRKFISPLELGNGKNISGVGINIFNPKQKMYPLVSGGDVARNSESKDSASYCEEDSLDPTKVKGSLVFCKFMIWGADSVIKSIGANGVIIQTDQFLDNADIFMAPATMVSSSIGTTIHTYIKSTRTPTAVIYKTRQLKATAPMVASFSSRGPNPGSTRILKPDIAAPGVDILAGYTPLKSLTGQKGDTQFSKFTLMSGTSMACPHVAAAAAYVKSFHPLWSPAAIRSALLTTAKPISRRLNPDGEFAYGAGNLNPSRAISPGLIYDLNEMSYIQFLCSEGYTGSSIAVLAGTKSINCSTLIPGQGHDSLNYPTFQLSLKSTRRPTTTTFRRRVTNVAHPVSVYNVTIKAPPGMEITVTPTTLSFSRLLQKKSFKVVVKASPLLSGKMVSGSLAWVGAQHVVRSPIVFYSP 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16631809 16642592 + Lsi04G011590.1 Lsi04g01159 661208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01159 627 ProSiteProfiles Serine proteases, subtilase domain profile. 1 476 - -
Lsi04g01159 627 SUPERFAMILY Subtilisin-like 70 476 IPR036852 GO:0004252|GO:0006508
Lsi04g01159 627 CDD PA_subtilisin_like 225 348 - -
Lsi04g01159 627 Pfam Subtilase family 84 468 IPR000209 GO:0006508|GO:0008236
Lsi04g01159 627 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Lsi04g01159 627 Pfam Fibronectin type-III domain 526 623 IPR041469 -
Lsi04g01159 627 Gene3D Peptidase S8/S53 domain 61 489 IPR036852 GO:0004252|GO:0006508
Lsi04g01159 627 ProSitePatterns Serine proteases, subtilase family, serine active site. 415 425 IPR023828 -
Lsi04g01159 627 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 61 621 - -
Lsi04g01159 627 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 61 621 IPR045051 -
Lsi04g01159 627 Gene3D - 493 626 - -
Lsi04g01159 627 Gene3D - 218 354 - -
Lsi04g01159 627 PRINTS Subtilisin serine protease family (S8) signature 86 99 IPR015500 -
Lsi04g01159 627 PRINTS Subtilisin serine protease family (S8) signature 414 430 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01157 Lsi-Chr4:16438544 Lsi04g01159 Lsi-Chr4:16631809 1.23E-23 dispersed
Lsi04g01159 Lsi-Chr4:16631809 Lsi04g00919 Lsi-Chr4:9370053 1.33E-158 dispersed
Lsi04g01158 Lsi-Chr4:16550162 Lsi04g01159 Lsi-Chr4:16631809 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01159 - - csv:101206801 983.4