Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01160 ATGATGGACTCAACCAATTTTCTTCTCTCTCTTCTCTTCTTCTTCTTCTTCGCGTCGTTTTTATTTCCAGCTACTTCATCTCCGCCATTGTTCCCGCCCCAAGCACTTCCCACCAAATCAGGCTATCTTCCGATCAACCCCACCACCGCCTCCGCCATTTACTTCGCCTTTTACGAAGCCCAAACCCCAATTTCTTCCATCTCTAAAACCCCTCTTCTTATTTGGCTTCAAGGCGGCCCTGGCTGTTCCTCCATGGTCGGCAACTTCTTCGAGCTCGGTCCATGGCGGGTCAACTTCCACAAACAAAAAACCGAACCCATTTCCCTAATCCCCAATCCAGGCTCCTGGAACCGAAGATTTGGCCTTGTATTTCTCGACAACCCAATTGGAACTGGCTTCAGCATTGCCGCAACAAAAGATGAGATCCCTACAGATCAAAACTCTGTTTCTAAGCATCTTTTTGCTGCAATTTCTTCGTTTATTGAGCTGGATTTGGCGTTTAAGAATCGACCCATTTACATTACAGGGGAGAGTTATGCAGGGAAATATGTGCCTTCAATTGGGTATTACATATTGAAGAAAAACCCCAAATTGCCTTTTGATAAAAGGCTCAATTTGGTTGGTGTTGCCATTGGAGATGGGTTAACAGATCCTATTACTCAAGTTGCAACTCATGGATTGAATGCTTTCTATTCAGGGTTAATTAATGAAAGGCAAAAAAAGGAGATGGAAATTGCTCAAATGGAAGCTGTGGAGTTGACCAAAATGGGGAAATGGAGTGAGGCCACAGATGCAAGGATTAAGGTCTTGGATTTGCTCAAGAACATGACAGGATTAGCCACTTTGTATGATTATACAAGAAAATCTCCTTATAATTCTGAATTGGTGGATGAGTTTTTGAGCTTCAAGGAGGTGAAGAGAGCATTGAGAGTGAAGAATGAGTCCATAGTTTTTGAAGGGTGTAGTGATGTTGTTGGGGAGGTTTTGAAGAATGATGTGATGAAGAGTGTAAGATACAAAGTTGATTTTTTGGTGAAGAATAGTAAGGTTTTGCTTTATCAAGGACAGTATGATTTGAGGGATGGTGTGGTTTCAACTGAGGCTTGGGTTAAGAAGCTGAAATGGGATGAGATTGAGAATTATTTGCAAGTAGATAGAAAGATTTGGAGAGTTGGAGATGAATTAGCTGGTTATGTTCAGAAATGGAAGAGTTTGAGCAATGTTATTGTGTTGGGAGCTGGTCATCTTCTTCCTACTGATCAATCTTTGAACTCTCAAGCAATGATTGAAGATTGGGTTTTGGAAAAGGGAGTTTTTGGTGATCATAATGCACAAGAGAAGAAGCCTTTTGGTAGTAATGATTTTGGGGTTTGGTGA 1377 41.61 MMDSTNFLLSLLFFFFFASFLFPATSSPPLFPPQALPTKSGYLPINPTTASAIYFAFYEAQTPISSISKTPLLIWLQGGPGCSSMVGNFFELGPWRVNFHKQKTEPISLIPNPGSWNRRFGLVFLDNPIGTGFSIAATKDEIPTDQNSVSKHLFAAISSFIELDLAFKNRPIYITGESYAGKYVPSIGYYILKKNPKLPFDKRLNLVGVAIGDGLTDPITQVATHGLNAFYSGLINERQKKEMEIAQMEAVELTKMGKWSEATDARIKVLDLLKNMTGLATLYDYTRKSPYNSELVDEFLSFKEVKRALRVKNESIVFEGCSDVVGEVLKNDVMKSVRYKVDFLVKNSKVLLYQGQYDLRDGVVSTEAWVKKLKWDEIENYLQVDRKIWRVGDELAGYVQKWKSLSNVIVLGAGHLLPTDQSLNSQAMIEDWVLEKGVFGDHNAQEKKPFGSNDFGVW 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16703808 16705184 - Lsi04G011600.1 Lsi04g01160 661209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01160 458 Pfam Serine carboxypeptidase 35 433 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 Gene3D alpha/beta hydrolase 31 445 IPR029058 -
Lsi04g01160 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 441 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 Coils Coil 231 256 - -
Lsi04g01160 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 405 418 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Lsi04g01160 458 SUPERFAMILY alpha/beta-Hydrolases 30 433 IPR029058 -
Lsi04g01160 458 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Lsi04g01160 458 PANTHER CARBOXYPEPTIDASE 28 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01160 K09645 CPVL; vitellogenic carboxypeptidase-like protein [EC:3.4.16.-] - csv:101205133 786.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01160 Lsi-Chr4:16703808 Lsi08g00695 Lsi-Chr8:15261022 7.70E-50 dispersed
Lsi10g01214 Lsi-Chr10:16411524 Lsi04g01160 Lsi-Chr4:16703808 6.70E-08 dispersed
Lsi04g01160 Lsi-Chr4:16703808 Lsi11g00697 Lsi-Chr11:7367195 2.19E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g424 . . . . . . . . . . . . . . Sed06g0201 . . Bhi07g00299 Tan04g1602 Cmetu10g0245 . Hepe01g0476 . . . . . . . . . . . . . Lsi04g01160 . . Cme10g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01160 Lsi_Chr04 FPKM 18.729897 20.082418 22.579329 20.893991 5.547867 6.119046 6.042681 1.554064 1.69944 0.933734