Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01162 ATGATTGAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAGATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGCGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGATTTCTCCGTCATCCTGATATTGTTGATATAAAACATATAATGCTCCCTCCATCCAGAAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTCACTCCTCAGCATCATCAGTTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCGCATGTGTTCCATAGAGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGCGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCCTTTTTCTCAAAGTATACACCAGCTATTGACATTTGGAGCATAGGATGTATTTTTGCTGAAATGTTGGCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTCCATGAACTGGATCTAATAACTGACTTACTTGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGGTATTTGAGTGGCATGAGAAAAAAGAATCCAATACCTCTATCGAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAACGCCTGCTTGCATTTGATCCTGAGGATCGTCCTTCTGCAGAGGAGGCATTAGCGGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCTAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAGGAGTACCTTCAAGGTTCTGAGAGTCACTTTTTGTATCCCAGTGGAATTGATCAATTCAAGCGACAATTTGATCATCTTGAGGAACGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACACCAATAGATGAAGATGATGATGATGACGAAAAATGTAAAACAGAACAACGAAATGCAGCTTCGACGGAAAGTGCAGCGCTTCAAAGCCCTCCTGGACTTGCTTATTCATTAACTGCTCAGAACGGTTCTGTTCAAGTAGATTGCAATAGTTATAACCTGTTGAGGAGTGAAGGAAAGAATGCAACATTGCTAGCCTTCCTCAGATGTTTAATTTGTAAAATTACCCTTATTCATACGCCTTTGAACTTGCCATTTAACTTTTATGCTGCAATATGGTTCAACTTCTGGGCCACCGAAAGTAATTGTCATAACTGA 1542 40.34 MIEKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLASKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMRKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDQFKRQFDHLEERSGKGERGSPLLRKHASLPRERIYTPIDEDDDDDEKCKTEQRNAASTESAALQSPPGLAYSLTAQNGSVQVDCNSYNLLRSEGKNATLLAFLRCLICKITLIHTPLNLPFNFYAAIWFNFWATESNCHN 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16742281 16747234 - Lsi04G011620.1 Lsi04g01162 661211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01162 513 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 442 - -
Lsi04g01162 513 CDD STKc_TDY_MAPK 15 352 - -
Lsi04g01162 513 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01162 513 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Lsi04g01162 513 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi04g01162 513 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
Lsi04g01162 513 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01162 513 SMART serkin_6 16 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01162 513 MobiDBLite consensus disorder prediction 407 437 - -
Lsi04g01162 513 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 4 442 - -
Lsi04g01162 513 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Lsi04g01162 513 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01162 Lsi-Chr4:16742281 Lsi09g01025 Lsi-Chr9:14562240 0 dispersed
Lsi04g01162 Lsi-Chr4:16742281 Lsi06g01294 Lsi-Chr6:23491733 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83578 PF00069 Pkinase 1.80E-67 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01162 - - csv:101204645 855.129