Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01163 ATGCAGGTTTTTGTGGCTTCTAGACTGAATGTTCCAGGAGCATGGCAGATGCCTCAGGTTAGTTGTGAACTTGTGAACTGTAATGGATTATCTGCCCTTTTGATATCGACGGCGTTTGAATCGGGAGGGATTGAAGATGGTGAAGACCCAAAGTTGGCAGCTGTTAGGGAACTGAGAAAGGAAACTGGAATAGTGTCTGCTGAAATCGTTGCCGAGGTACCCAAATGGTTGACTTACGACTTTCCTCCTGCTGTGAAGACCAAAGTCAATCGTCTCTGGGGCGGGCAATGGCACGGGCAGGCACAAAAATGGTTTCTTATGAGATTGACAAAAGACGACAGTGAGATTAACTTGGACAACGATGAAGCGGATGTTGAATTTGCAGAGTGGAAATGGGCGAACCCCGAAGAAGTTGTTGAACAGGCTGTGGACTACAAGAGACCAACTTATGAGGAAGTAATGAAGACTTTTGCACCTTACCTTGATGGAAACAAAATATCTACCAAATGCAAATCATCCAAATGGTGA 528 45.08 MQVFVASRLNVPGAWQMPQVSCELVNCNGLSALLISTAFESGGIEDGEDPKLAAVRELRKETGIVSAEIVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDEADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLDGNKISTKCKSSKW 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16797077 16798953 - Lsi04G011630.1 Lsi04g01163 661212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01163 175 Pfam NUDIX domain 12 151 IPR000086 -
Lsi04g01163 175 ProSiteProfiles Nudix hydrolase domain profile. 1 155 IPR000086 -
Lsi04g01163 175 SUPERFAMILY Nudix 41 160 IPR015797 -
Lsi04g01163 175 CDD Ap4A_hydrolase_plant_like 2 157 IPR022927 -
Lsi04g01163 175 PANTHER BNACNNG74470D PROTEIN 40 175 - -
Lsi04g01163 175 PANTHER BNACNNG74470D PROTEIN 3 23 - -
Lsi04g01163 175 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 161 - -
Lsi04g01163 175 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 40 175 - -
Lsi04g01163 175 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 3 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01163 - - - csv:101222119 306.219
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01826 Lsi-Chr3:29770701 Lsi04g01163 Lsi-Chr4:16797077 9.34E-46 dispersed
Lsi04g00160 Lsi-Chr4:1796567 Lsi04g01163 Lsi-Chr4:16797077 2.10E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g428 . . . . Bpe13g01031 . . . . Cmo18g00957 . Cma18g00956 . Car18g00873 . Cpe09g00366 . . . . . . . . Cla07g00640 Cam07g0663 Cec07g0715 Cco07g0718 Clacu07g0661 Cmu07g0684 Cre07g1032 . . Cone6ag0396 Cone9ag0422 Lsi04g01163 Csa05g02704 Chy10g01230 Cme10g01537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000763 3 3 1 2 1 3 4 3 3 3 3 3 4 3 3 3 3 4 3 3 3 2 5 3 4 3 3 5 5 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01163 Lsi_Chr04 FPKM 4.992337 5.656265 6.200292 8.667278 10.609691 10.410029 10.818787 5.890569 8.035858 6.964496