Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01185 ATGACTTTAGAGGTGGTGCCGTGCCAAGGCTGTTTTCATGTGGGATACACCAACGAAAAGGGTGAGCTGTTATATGGTCTTATCAAGGCGGCTGAACAAACACTTGGAGAGCACAAATTCATCGAGAAATGCAGATGTGGGGCATCGGCAATGTTGCCCAAGATTGAAAAAGCTAGGAAAATCAGAACTTTAATGGCTCAGCAAGCACATAGTATTGCTCCAGATGCATCAGGAGATGGTACAATAGTAGCTGCAAATTTGAATCAAGATTATGGGGATACTGTTCCTTCAAAGCCTCAGAATATTGGACTTCAGGTAGCAAATGAAATGGCAGCTGGTGTCACTTGGAGGAAGCAAGAGCAACCAGGCGCTGAATTTGTAGCAGAAGGTACTTTTGGCACTGTAATAGTCCATGATGGAGATGAGAATGATAAGGTGGCCTCTCAACTGGATATTGGCATTGCTGAACCACCAACTGGTTCCTTACGCAATGAGAGCCTATCCATTAGTGTAACTAGATTCGACTCTAGTGTGCTGGATCGTACAGGCGGTATTGTAAATAATATTCTTGATGGAAAGTTGGATCCCACCATGCATGCATCTTCACCTTCATTTTTGGGTATTCATGAGCATAGCACATTGAAGAGTGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTTTGGTCCATTTATGCAGCGGGTAATACTGTACCCATTCCGTTCTTGAGGGCTACTGACATATCCCCTATTGCTTTGTTATCTGACAATGTCCTTGGAGGCGTGCAGCACGACAATAGGGGCACCGTAGCGGTGGAAACACTTCAGGAACTTTTCACTGGTGATGGACAATCAAAAAAGGGTCGTAGGGGTCAAAATGAGATGCCCCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTTCGAAGATATGCCGCTTCAGGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTTAGAACTATCCTCCGATTGTAG 1074 44.41 MTLEVVPCQGCFHVGYTNEKGELLYGLIKAAEQTLGEHKFIEKCRCGASAMLPKIEKARKIRTLMAQQAHSIAPDASGDGTIVAANLNQDYGDTVPSKPQNIGLQVANEMAAGVTWRKQEQPGAEFVAEGTFGTVIVHDGDENDKVASQLDIGIAEPPTGSLRNESLSISVTRFDSSVLDRTGGIVNNILDGKLDPTMHASSPSFLGIHEHSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCFEDMPLQELQATQEQQTIQNLCDTLRTILRL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17616245 17620934 - Lsi04G011850.1 Lsi04g01185 661234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01185 357 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 33 347 - -
Lsi04g01185 357 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 33 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01185 - - - csv:101209775 556.984
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01185 Lsi_Chr04 FPKM 5.126126 4.454249 8.217525 6.618109 4.195082 3.983812 6.203537 9.191036 8.668154 11.598891