Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01186 ATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCACCAACAAATCTGAGCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCGTCGACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGACGACGACGACGACGACGACTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCATCAAGACCGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCTTCAGTTTCGACCAAGCCTCGAACTTCGCCGCTGCCATTTATGGACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGCCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCGAGGTCGCGGAACAGAGAATCTATTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATAGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGCGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCTATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGATCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCCATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTCGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGGTCAGCAGTGCATCCAATGAGGGAGTTGAACTATGTTTACTGTTCATCTGATGAATGTGTTGCTGAATTTTGGAGTGTTCATACGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGATTGAAGGATGGCGAGGGTGTGTGGTTGACGGCCTGACGGGAGTTTATGGCCCTCCTAGAACTAGAGGAAAAGTTGAGTTTTTGAATGAGTTGGGTGGCCTTTGTGGGGGGAATTGGTGTATAGTGGGTGATTTTAATATCACTCGTTCTCTTGTTGAAAGGGCTCCGTTGTGA 1743 49.05 MDPPTSYRSRRTTNKSELYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIIKTDRNRPRNRSVSSSVSTKPRTSPLPFMDFQPGSPGKRAASEEGDDSEEDDGDGYSTFVVRSTARSRNRESISGTVVRRTAGSRSGSRDRGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRELNYVYCSSDECVAEFWSVHTSLLFHDFVAKCLTKDPRSRPAASEMLKIEGWRGCVVDGLTGVYGPPRTRGKVEFLNELGGLCGGNWCIVGDFNITRSLVERAPL 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17627287 17636043 - Lsi04G011860.1 Lsi04g01186 661235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01186 580 Pfam Protein kinase domain 271 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 175 198 - -
Lsi04g01186 580 MobiDBLite consensus disorder prediction 228 267 - -
Lsi04g01186 580 ProSiteProfiles Protein kinase domain profile. 271 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 125 140 - -
Lsi04g01186 580 ProSitePatterns Protein kinases ATP-binding region signature. 277 300 IPR017441 GO:0005524
Lsi04g01186 580 MobiDBLite consensus disorder prediction 31 50 - -
Lsi04g01186 580 SUPERFAMILY Protein kinase-like (PK-like) 268 528 IPR011009 -
Lsi04g01186 580 SMART serkin_6 271 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 115 214 - -
Lsi04g01186 580 MobiDBLite consensus disorder prediction 24 94 - -
Lsi04g01186 580 Gene3D Transferase(Phosphotransferase) domain 1 267 530 - -
Lsi04g01186 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 213 523 - -
Lsi04g01186 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 213 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01186 - - - csv:101209775 847.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01186 Lsi-Chr4:17627287 Lsi04g02056 Lsi-Chr4:27651323 8.86E-72 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi04g01186 Lsi-Chr4:17627287 4.91E-35 dispersed
Lsi04g01186 Lsi-Chr4:17627287 Lsi05g01693 Lsi-Chr5:24479118 3.85E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83579 PF00069 Pkinase 2.90E-65 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01186 Lsi_Chr04 FPKM 4.613771 4.254596 7.334015 7.4877 5.782516 4.964876 6.099488 6.209076 7.233727 6.970987