Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01186 ATGGATCCCCCAACCTCCTACCGTAGTCGCAGAACCACCAACAAATCTGAGCTCTACTCCACAGTTGTCATCCATTCCAATTCTGATTCCGACTCCGACAACAATCCTGACGATCGGAATCTTCACCGTCGACGAAGGCCACCCAGCGAAGGACAAGACCTTTACGCCACAATGCTCTATAAGGACGTTGATAAGCCCCGCGACGACGACGACGACGACGACTCCTCTCTCCCTCCTCTCCTCAAACGCCTTCCCAAGGATTTCGGTGGCGGAGCCCCAATTGACTACGAGGACGACCATGCTTTTGATTTCGATCACGATACTGAAGACTTCGGTACCATGATCATCAAGACCGATAGGAATCGTCCTCGAAATCGCTCTGTGTCTTCTTCAGTTTCGACCAAGCCTCGAACTTCGCCGCTGCCATTTATGGACTTTCAGCCGGGGAGCCCCGGGAAGAGAGCTGCCAGTGAAGAAGGCGACGACAGCGAGGAAGATGATGGTGATGGGTATTCTACGTTTGTGGTGAGGTCCACGGCGAGGTCGCGGAACAGAGAATCTATTAGTGGGACTGTTGTTCGAAGGACCGCTGGTAGTCGCAGTGGTTCCAGAGATAGAGGCGGAGGACTTGAGGGGTCCACGATGGGCAGAGCGGTCGCGAGTATGCAAGGTATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGAATGGATCACCGAGGAGCGAGGAAGGCGGTGGTCGGATACGCAGTAAGGTATCCTCGAGTTCTATTCCGGAAAGCATCACCAGGGAAGATCCACATTCTAAGTATGAATTGCTCAACGAACTTGGAAAGGGATCCTATGGGGCTGTATATAAAGCAAGAGATATTAAGACCTCTGAGCTGGTTGCCATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATTGAGATGTTGCAGCAATGCAGTCATCCAAATGTTGTCCGCTATCTTGGGAGCTATCAAGGAGAAGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTCGCTGACTTGATGAATGTTACCGAGGAAGCTCTAGAGGAATATCAGATTGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCAATATTCAAAGTTCACAGAGATATCAAGGGTGGTAATATTTTGTTAACTGAGCAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCCCAGCTGACTAGGACCATGTCAAAGCGCAATACATTCATTGGCACTCCACATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATTGAAATGGCTGAGGGGCTTCCTCCAAGGTCAGCAGTGCATCCAATGAGGGAGTTGAACTATGTTTACTGTTCATCTGATGAATGTGTTGCTGAATTTTGGAGTGTTCATACGTCCTTGCTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAAATGTTGAAGATTGAAGGATGGCGAGGGTGTGTGGTTGACGGCCTGACGGGAGTTTATGGCCCTCCTAGAACTAGAGGAAAAGTTGAGTTTTTGAATGAGTTGGGTGGCCTTTGTGGGGGGAATTGGTGTATAGTGGGTGATTTTAATATCACTCGTTCTCTTGTTGAAAGGGCTCCGTTGTGA 1743 49.05 MDPPTSYRSRRTTNKSELYSTVVIHSNSDSDSDNNPDDRNLHRRRRPPSEGQDLYATMLYKDVDKPRDDDDDDDSSLPPLLKRLPKDFGGGAPIDYEDDHAFDFDHDTEDFGTMIIKTDRNRPRNRSVSSSVSTKPRTSPLPFMDFQPGSPGKRAASEEGDDSEEDDGDGYSTFVVRSTARSRNRESISGTVVRRTAGSRSGSRDRGGGLEGSTMGRAVASMQGMGELGFGKQRKGNGSPRSEEGGGRIRSKVSSSSIPESITREDPHSKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRELNYVYCSSDECVAEFWSVHTSLLFHDFVAKCLTKDPRSRPAASEMLKIEGWRGCVVDGLTGVYGPPRTRGKVEFLNELGGLCGGNWCIVGDFNITRSLVERAPL 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17627287 17636043 - Lsi04G011860.1 Lsi04g01186 661235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01186 580 Pfam Protein kinase domain 271 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 175 198 - -
Lsi04g01186 580 MobiDBLite consensus disorder prediction 228 267 - -
Lsi04g01186 580 ProSiteProfiles Protein kinase domain profile. 271 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 125 140 - -
Lsi04g01186 580 ProSitePatterns Protein kinases ATP-binding region signature. 277 300 IPR017441 GO:0005524
Lsi04g01186 580 MobiDBLite consensus disorder prediction 31 50 - -
Lsi04g01186 580 SUPERFAMILY Protein kinase-like (PK-like) 268 528 IPR011009 -
Lsi04g01186 580 SMART serkin_6 271 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01186 580 MobiDBLite consensus disorder prediction 115 214 - -
Lsi04g01186 580 MobiDBLite consensus disorder prediction 24 94 - -
Lsi04g01186 580 Gene3D Transferase(Phosphotransferase) domain 1 267 530 - -
Lsi04g01186 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 213 523 - -
Lsi04g01186 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 213 523 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01186 Lsi-Chr4:17627287 Lsi04g02056 Lsi-Chr4:27651323 8.86E-72 dispersed
Lsi11g00218 Lsi-Chr11:2223292 Lsi04g01186 Lsi-Chr4:17627287 4.91E-35 dispersed
Lsi04g01186 Lsi-Chr4:17627287 Lsi05g01693 Lsi-Chr5:24479118 3.85E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83579 PF00069 Pkinase 2.90E-65 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01186 - - csv:101209775 847.04