Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01187 ATGGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTAAAAATAGCTGAAGACTTGGCCAACGGTCTGCTCTACATCCACCAGAACCCAGGCTCAACACATGGAAACCTCAAATCCTCAAACGTACTATTAGGATCCGACTTTGAGTCATGTCTTACTGATTATGGTCTTAACTTATTTCGAGATCCCGACTCGCTCGAAGAACCTAGTGCAACCTCACTCTTTTACCGAGCTCCTGAATGTCGTGATATCCGTAAGCCAACCACCCAACAAGCTGATGTCTATAGTTTTGGTGTTCTTCTGTTGGAGCTTCTTACTGGGAAAACACCATTCCAAGATCTTGTTCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAGTTCAGTTAGAGAAGAGGAAACGGAGTCCGGGGACGATCCTGCGTCTGGGAACGAGGCATCTGAAGAGAAACTTCAAGCACTTTTGAACATAGCAATGGCTTGTGTTTCGCTAATGCCGCAGAACCGACCTACAATGAGGGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGCTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGATGGTCTGATATTGTGCAGAGTTTGCCCAGGGAAGAACATTTAAGCATTTGA 663 45.55 MGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGSTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEEPSATSLFYRAPECRDIRKPTTQQADVYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVSSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPTMREVLKMIRDTRAEAQISSNSSDHSPGRWSDIVQSLPREEHLSI 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17701397 17704614 - Lsi04G011870.1 Lsi04g01187 661236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01187 220 Gene3D Transferase(Phosphotransferase) domain 1 3 208 - -
Lsi04g01187 220 SUPERFAMILY Protein kinase-like (PK-like) 8 188 IPR011009 -
Lsi04g01187 220 MobiDBLite consensus disorder prediction 130 151 - -
Lsi04g01187 220 Pfam Protein kinase domain 17 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01187 220 MobiDBLite consensus disorder prediction 191 220 - -
Lsi04g01187 220 MobiDBLite consensus disorder prediction 191 205 - -
Lsi04g01187 220 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 210 - -
Lsi04g01187 220 ProSiteProfiles Protein kinase domain profile. 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01187 220 SMART serkin_6 1 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01187 220 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 3 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01187 Lsi-Chr4:17701397 Lsi01g00962 Lsi-Chr1:7807479 2.28E-47 dispersed
Lsi04g01187 Lsi-Chr4:17701397 Lsi11g00286 Lsi-Chr11:2954323 1.48E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83580 PF00069 Pkinase 3.30E-20 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01187 - - csv:101209119 441.425