Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01188 ATGAAACTTATAGTTTTGAGGTATTCTCCATTTTTCTTCGTTTTGTTGGTTTGTGTACTGCCTCTGGTTCGAGCTGGAGATGCAGAAGCTCTGTTAGCACTGAAAGAATCTCTCGACCCTGGGAACTCGCTTCCATGGCGGGGAAGATCTGTATGCCACTGGCAAGGGGTTAAAGAATGCGCGAATGGGCGGGTAACTAAGCTTGTTTTGGAGCATCTAAATCTCTCCGGTGTTCTTAACCACAAGATTTTGAATCGTTTGGATCAGCTTCGTGTTCTCAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTCTCGGGTCTCGTTAATCTCAAATCCCTCTATCTAAGCGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCGATCTCCACCGCTTGAAGGTCGTCGTTCTTTCCGGTAACCAAATATCTGGCCCCATTCCAGAGTCATTGCTCAAACTCCGGCGTCTCTATGTTCTACACTTGCAGGACAACCAATTCACCGGCTCCATTCCTCCTTTCAATCAAACCAGTCTCCGATTCTTCAATGTCTCTAACAACCATCTCTCCGGCGACATTCCAGTAACCCCCACCTTGGCGCGATTCAATGTCTCGTCATTTTCCGGCAACCTGGAACTTTGTGGAGAACAAGTTCAAAACCCCTGTGGAAATATTTCCATTGCGCCATCATTAAGTCCCTCTTATCCACAAATCCCGAACTCAAGCTCGTCTTCAAGACGCAACAAATTGGTGAAGATAATAGCAGGAAGCGTTGGTGGGTTTGTCGGGCTGCTATTAATCATTCTTTTAATGTGTATGATTTGCAAATGTAAGGAAAGAAAGAGCCTTGCGGAGGTTAGAAACAAAGGAATCGGGGACGAGGGGATGGGGATGGGGATGGGAATGGAAGAAACATCTGGAACTCCCAGCGGTGGTAGAGGAGGTAATAACGGTGGAAAACAAGGGGGGTTTTCATGGGAAAGTGAAGGACTAGGGAGTCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATCGGAAGCACATACAAGGCAGTGATGGAATCTGGGTATATTGTGACAGTGAAGCGGCTGAAGGATTCAAGGTACCCACGAGCAGAGGAATTCAGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACATCCCAACTTGGTTCCTCTTAGGGCATATTTCCAGGCTAAGGAGGAACGCTTGCTCGTATACGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGACAAAATTCAGCGAAAAGGAGAGCTAGAGGTAGGTATAGATGGCCAGGATACTCTGGGCATTCATGGAGAAGCGTGGGGGACACGCTCTGGTAAAGCTAACCTCGTGTCTTGCGGTAGACTTGGCCAAAAGTTGAGCTTAGATACACATATCACGTGGCTTTCCCCATGCTTCCCGTTGCCTCGCTGA 1518 48.02 MKLIVLRYSPFFFVLLVCVLPLVRAGDAEALLALKESLDPGNSLPWRGRSVCHWQGVKECANGRVTKLVLEHLNLSGVLNHKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISDLHRLKVVVLSGNQISGPIPESLLKLRRLYVLHLQDNQFTGSIPPFNQTSLRFFNVSNNHLSGDIPVTPTLARFNVSSFSGNLELCGEQVQNPCGNISIAPSLSPSYPQIPNSSSSSRRNKLVKIIAGSVGGFVGLLLIILLMCMICKCKERKSLAEVRNKGIGDEGMGMGMGMEETSGTPSGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTIGSTYKAVMESGYIVTVKRLKDSRYPRAEEFRRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHDKIQRKGELEVGIDGQDTLGIHGEAWGTRSGKANLVSCGRLGQKLSLDTHITWLSPCFPLPR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17704766 17706582 - Lsi04G011880.1 Lsi04g01188 661237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01188 505 MobiDBLite consensus disorder prediction 299 326 - -
Lsi04g01188 505 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Lsi04g01188 505 SUPERFAMILY L domain-like 26 218 - -
Lsi04g01188 505 SUPERFAMILY Protein kinase-like (PK-like) 361 447 IPR011009 -
Lsi04g01188 505 Pfam Protein kinase domain 360 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01188 505 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Lsi04g01188 505 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Lsi04g01188 505 Gene3D Ribonuclease Inhibitor 180 228 IPR032675 -
Lsi04g01188 505 Gene3D Phosphorylase Kinase; domain 1 340 432 - -
Lsi04g01188 505 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 445 - -
Lsi04g01188 505 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 26 445 - -
Lsi04g01188 505 ProSiteProfiles Protein kinase domain profile. 357 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01188 Lsi-Chr4:17704766 Lsi04g00237 Lsi-Chr4:2405835 4.90E-72 dispersed
Lsi04g01188 Lsi-Chr4:17704766 Lsi11g00286 Lsi-Chr11:2954323 1.19E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83581 PF00069 Pkinase 1.10E-12 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01188 - - csv:101209119 727.243