Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01198 ATGTCTCTTGTTGGGAAATTTGTGAGTGAATTAGAAATAAATGCAGCTGCTGAGAAATATTATGAAATCTTTAAAGATAAAGTTTCTCATATTCCTAATATTTCTCCAACTATCTTCCAAAATGTTGAAGTTCATGAAGGTGATTGGGACACTCATGGCCATGGCTCCATCAAAATTTGGAATTACACCCTTGATGGAAAAGCCGAAGTATTCAAAGAACAGGTAGAGTTTGATGACGAGAAGTTAGCAGTAACCTTGATTGGATTGGAAGGAGATGTGTTCGAGCATTACAAAACTTTCAAAGGGACATATCAAGTTGTGCCAAAAGGGCCCGAGCATAGTTTGGCAATTTTGACTTTGGAATTTGAGAAACTTAATGATGGTTCTCCTTACCCATATAAATACCTTGATCTTATGAATACCATCACCAAAGACATTGAAGCTCATATTAAATAA 456 35.75 MSLVGKFVSELEINAAAEKYYEIFKDKVSHIPNISPTIFQNVEVHEGDWDTHGHGSIKIWNYTLDGKAEVFKEQVEFDDEKLAVTLIGLEGDVFEHYKTFKGTYQVVPKGPEHSLAILTLEFEKLNDGSPYPYKYLDLMNTITKDIEAHIK 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18220622 18221224 + Lsi04G011980.1 Lsi04g01198 661247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01198 151 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORT SUPERFAMILY PROTEIN 1 150 - -
Lsi04g01198 151 PANTHER BNAA01G13350D PROTEIN 1 150 - -
Lsi04g01198 151 Pfam Pathogenesis-related protein Bet v 1 family 2 150 IPR000916 GO:0006952
Lsi04g01198 151 SMART Bet_v_1_2 2 151 IPR000916 GO:0006952
Lsi04g01198 151 CDD Bet_v1-like 5 151 - -
Lsi04g01198 151 Gene3D - 1 150 IPR023393 -
Lsi04g01198 151 SUPERFAMILY Bet v1-like 5 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01198 - - - csv:101206688 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01198 Lsi-Chr4:18220622 Lsi11g00139 Lsi-Chr11:1571667 6.42E-86 dispersed
Lsi05g01365 Lsi-Chr5:21527611 Lsi04g01198 Lsi-Chr4:18220622 1.36E-19 dispersed
Lsi11g00141 Lsi-Chr11:1581218 Lsi04g01198 Lsi-Chr4:18220622 9.62E-46 dispersed
Lsi11g00142 Lsi-Chr11:1585683 Lsi04g01198 Lsi-Chr4:18220622 5.34E-49 dispersed
Lsi04g01197 Lsi-Chr4:18094681 Lsi04g01198 Lsi-Chr4:18220622 2.04E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g443 . . . . . . . Bma15g00041 . . . Cma04g00048 . . . . . Bhi07g00315 . . . Hepe01g0494 . . Cla07g00691 . Cec07g0775 Cco07g0754 Clacu07g0711 Cmu07g0728 Cre07g1079 . Cone19ag0758 . . Lsi04g01198 . Chy10g00261 Cme10g01580 Blo06g01016 . Bda07g01758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01174 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000116 5 5 9 3 1 7 1 9 8 8 6 7 6 9 11 7 7 3 6 7 16 6 10 7 10 14 10 20 8 0 226
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01198 Lsi_Chr04 FPKM 6.393146 8.413052 99.735474 104.085754 12.939235 10.077094 11.358595 0.305786 0.466752 0.451569