Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01202 ATGGCGTACTATGAAGCTCCCTCCTTCTCTCTCGGCCTTGATTTCGATTTCGATTTGGAGCCCCAAATTCCTTTACCGGATTGCGCTACTCACAAACCATCTTCCGACTGTTTGGTGGGTGTCAATGCTTCGTCGAAAGAGGACGATGTTGGGGTGGTGGGAACAGGGGATGCGGATTGCATTGGAGAAATTGGACATGATTCACCTAGAAAATTTAAGCGGCTCAAGCGTGGGCCAGCTCGATGTTCTTCGGTATCCAAGAAAAGCGAATCATCACCTTTGTTTTCTGCAGTCGATGATGACATTGAAGAGTTTTCATCCCAAGAAGATTGTCCCAGAGAGTATAGCGAAGCTTCCATTCAAGTGTTTAATGGTTTAGGACATGCTAGTCATCATACTATTGGAAATTTGGGATTGTTGTATTTGTATCATGCGAGCTTATTGTGCATACAATATTTTCTTCCAGCTTCCCTTATAATCAAACTTAGTGGAGTAGGATGGTTATTTTTTGAACTTAGTCACAAAGTTGCTGCAGGAGGTAAAGATATAAAAGCGTACCGTGTTACCTGTTTTCATGCTTTGTTGCTAACAGAGATGAAAGGTTGTAATTGTTCCATGAGATTAGTTAAGCCATGCTTAAGTTGGCTTGGATACCATGATATAAAAGAAAGTTGTCAAACCAACACATATCAGATGGACTCTGAGATTACAAATAATGGACTTTGGCTAACTGAGGGGTTTTACTTTCTGAAATTAACACATTGTTCACATGTACCTCAGTTTCAACAGACCATCATCTGTCGTCACTCTTCCAATCTGTCTGCAGCTCCTTTACATGGTATCTTAACTGCTCCCACTTCCAGCCAGCAAAAGGGAAGGAAAGACAAACAGACCGCAGACGCCCCAACTTCTGTTGGTTTGGAAAAGCAAAATAAGTCATTGTTTTCTAATTTAACCATCAGTCCTCTTCGAAAGTTCCAGTTACTTGAATCTGATTCAGATGAACCTTCTAGCTGTGACAATCAAAGCAGAAAAGGGCCCGAAGTTGCTTCATCTTCAAACAAGCAAAAGTCTACATTTGGTCTCTCTGCAACAGTGGATGAGAAAAAGAAAAGTTTGACATCGAGTATTACTCAAAAAGAGGATCTGTGGAAAGGTTTTTGTCAAATGAAAAGTTTTCATTTGCCAACACCAGCCTTTGATGAAGTCTGTAAAGAATTTTCGCAGTTAAAGCAGGATAATAAAGCTGCTACTGAATTAGGAAGTAGTGCTCATATTAGGTGCATGGATAATCGTACCAGCAATAGTAGCAGCTCAAATGAAATGATGGATAAGCTTGGCTGTCCTGCTTATGACTATTTTTTTCATAATGATCCAAGGATTCAAAAATTAGTTCGCAATCGCTTACCAAACTTTTTTCCATTGGGAGTTGATGGCAGCAGAGGATCGGTGATTGATTATATGAGACAATTTAGCAATGGAGAGGCTTCGACTAGCCAACCTTCACAGTTTAACATGGGGAAAAGTTCAAAAAGATCAACAAGTATTTCAAAAGGATCTAAGAACATCGCTTCCAAACGTATGGCTAATGAGAAAGCTGTTCCACCATTAAGCAGTAAAAGAGCACCCAAAAGGGCAGCAACTCAAAAAAATAAAATTGGTAGCAGTTCTAGAAATTTAAAAAGTAAACAAGGGGCGTCAAACTCTGATCTCTTAGAGGATTCTGGAAACTGGACTGATCCTAAGAGCTCTTTTAGTCTTCCTAGAGACGCTGGGAAAAGAAGGGTCCATGCAAGTGGGCAATCAGCTGGTCACTGGTATACATCCCCAGAAGGGAAGAAGTCACAAACTGTAGAGATAATTGCAGAAACAACCATTCAGCATTTTCTTTTTCTGTTACCCAGCTTGATATTTTGTATTGATGGTTATGTTATGTCAATGATGGTGGTGGTTTCCAATATTATTGTTATGGTATACGTCACTAAAAGTGGGGAGGAGTTGACTGGCCGAACAGCTTATAGATTTTACAAAAAGGTAAATCCAGATCCCAATCCTCTGGCTTTGGCTTTCCTACTCTTTTGTGGTTCTATTACACATTCAACGCTTCTATTGATACTGGAGGCTTTAGGAAGTCGAAAAAGAAAGGAGCAACCAAGAAGAGGAAATGATAAAAAGGATACCGTGCATGGGAGGCAAAACCGCACAAACAATCTAAACCCAATTTCCCATGTGATTGGTAACATCATTGACTTTCTAAGTGCTTAA 2265 40.09 MAYYEAPSFSLGLDFDFDLEPQIPLPDCATHKPSSDCLVGVNASSKEDDVGVVGTGDADCIGEIGHDSPRKFKRLKRGPARCSSVSKKSESSPLFSAVDDDIEEFSSQEDCPREYSEASIQVFNGLGHASHHTIGNLGLLYLYHASLLCIQYFLPASLIIKLSGVGWLFFELSHKVAAGGKDIKAYRVTCFHALLLTEMKGCNCSMRLVKPCLSWLGYHDIKESCQTNTYQMDSEITNNGLWLTEGFYFLKLTHCSHVPQFQQTIICRHSSNLSAAPLHGILTAPTSSQQKGRKDKQTADAPTSVGLEKQNKSLFSNLTISPLRKFQLLESDSDEPSSCDNQSRKGPEVASSSNKQKSTFGLSATVDEKKKSLTSSITQKEDLWKGFCQMKSFHLPTPAFDEVCKEFSQLKQDNKAATELGSSAHIRCMDNRTSNSSSSNEMMDKLGCPAYDYFFHNDPRIQKLVRNRLPNFFPLGVDGSRGSVIDYMRQFSNGEASTSQPSQFNMGKSSKRSTSISKGSKNIASKRMANEKAVPPLSSKRAPKRAATQKNKIGSSSRNLKSKQGASNSDLLEDSGNWTDPKSSFSLPRDAGKRRVHASGQSAGHWYTSPEGKKSQTVEIIAETTIQHFLFLLPSLIFCIDGYVMSMMVVVSNIIVMVYVTKSGEELTGRTAYRFYKKVNPDPNPLALAFLLFCGSITHSTLLLILEALGSRKRKEQPRRGNDKKDTVHGRQNRTNNLNPISHVIGNIIDFLSA 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18476141 18480040 + Lsi04G012020.1 Lsi04g01202 661251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01202 754 MobiDBLite consensus disorder prediction 715 731 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 494 524 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 284 306 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 494 610 - -
Lsi04g01202 754 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 121 - -
Lsi04g01202 754 PANTHER RHO GTPASE-ACTIVATING PROTEIN 658 678 - -
Lsi04g01202 754 PANTHER RHO GTPASE-ACTIVATING PROTEIN 270 614 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 331 360 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 549 584 - -
Lsi04g01202 754 MobiDBLite consensus disorder prediction 715 738 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01202 - - - csv:101218535 568.155
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g508 . Blo03g01449 . . . Bpe08g01125 . . . . . Cma09g00951 . Car09g00864 Sed07g2689 Cpe06g00766 . Bhi09g01866 Tan01g4548 Cmetu01g1257 . Hepe01g1279 Mch11g1187 . . . . . . . . . . . . Lsi04g01202 . . . . . . . . . Bma07g01298 . . . Cmo09g00949 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006811 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01202 Lsi_Chr04 FPKM 31.678226 38.178574 1.241442 2.075752 3.30153 2.493992 3.213959 70.015564 71.901443 68.700768