Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01203 ATGAGCGTAGTAGGTTTTGATATTGGAAATGAGAATTGTGTTATTGCTGTGTCGAGGCAACGTGGTATCGATGTTCTGCTGAATGAGGAATCACAACGAGAAACCCCTGCAGTGATATGTTTTGGGGAAAAGCAGCGGTTTTTGGGTTCAGCAGGTGCTGCTTCTGCTACAATGAACCCAAGATCCACAATATCTCAGGTAAAGAGATTGATTGGACGTAACTTCGGTGAGCCAGATGTTCAAAAGGATCTCAAAATGCTTCCTTTCAAAACATCTGAAGCCCTTGATGGCAGCATCTTGGTTCACGTGAAATACTTGGGGGAGACCCATACATTTACTCCAGTTCAGATCATGGCAATGCTCCTTGCACATTTGAGAGATGTAGCTGAGAAAAATTTGGGAGCACCATTTTCAGATTGTGTTATTGGTATTCCATCCTATTTTACAGATTTGCAGAGACGTTTATATTGGAATGCTGCTGCTATTGCTGGTTTAAAGCCTTTGAGACTCATGCACGACTGTACTGCAACAGCACTTAGCTATGGAATTTATAAAACAGATTTCTCAACTACAGGTCCAATATATGTTGCATTTGTTGATATTGGTCACTGTGATACCCAGGTTTCTATTGTAACATTTGAGCCTGGACATATGAGGATCATGTCACATACCTATGATAGAGATTTAGGAGGTAGAGACTTTGATGAGGTTCTATTCAGCCACTTTGTTGCAGAATTTAAGAAGAATTATGATATAGATGTAAATTCAAATGTCAAGGCTTCTATCAGATTGCGGGCAGCTTGTGAGAAGCTGAAGAAAGTTTTGAGTGCAAATTTAGAGGCACCTCTTAATATTGAATGCCTGATGGATGAGAAAGACGTTAAGGGATTTATCAAAAGGGAAGAATTTGAAAAGCTTGCTTCTGGGTTATTGGAGAGGATTAGCACTCCTTGTACCAGAGCCTTAGCTGATGCAGGATTAACTGTAGAAAAAATCCATTCTGTTGAGCTTGTTGGATCAGGGTCAAGGACCCCTGCAATAACAAGGTTATTGACTTCTGTATTTAAAAGAGAACCCAGTCGCAAACTTAATGCTAGTGAATGTGTAGCTCGTGGTTGTGCTTTACAGTGTGCCATGCTTAGCCCAGTTTTCCGTGTCAGAGAATATGAGGTTCAGGATTCATCCCCTTTCTCCATTGGCTTCTCATCAGATGCAGGCCCAATTAGCTTAGGCTTAAATAATGTACTATTTCCCAAAGGCCAGCACATTCCAAGTACCAAAGTTCTATCATTCCACCGCAACAGTTTATTCCACTTAGAAGCAGTCTATACTAATCCGGATGAACTACCTCCTGGCATGTCTTCAAAAATTGGTTGCTTTACAATTGGTCCTATCCAAGGTTCAAACAACTCGAATTCAAGGGTTAAAGTCAGAGTTCAATTAAATATGAACGGCATCATTACTGTTGAATCAGCTACATTTGTAGAGGATAATGTAGATGAACAAATGCTGAGGAGAGATGCTGCTCACTCGAACACAGAAAAAATGGAGACTGAGTTTGTTGATTCTTCCCATTCTGAGGTATTGAAGATTTCTTTCCCTGGGAAATTGAGCACAAAGAGGATTGACATACCAGTTAGTGAACATATATATGGTGGAATGACCAAGGCTGAGATCTCAGAAGCCCAAGAAAGAGAACTCCAACTGGCCCAACAGGATAAAAATATGGAACAGGCCAAAAATAAGAAGAATGCTTTAGAGTCATATGTCTATGAGATGAGGAATAAGCTTTTCAACACATATCGGAGTTTCGTTAGTGATCAAGAGCGAGAAGGCATCTCCTCAAGCCTCCAGCAAACAGAGGAGTGGCTATATGAGGATGGAGACGATGAGACAGAGAGTGCTTATTCTTCTAAGTTAGATGACCTTAAGAAGGTTGTTTCTATTTCTGTTTTGGTGGATCCGATAATTAACCGATACGAAGATGAAGAAGCTAGAGCACAAGCTAAAGCGCATCTGTTAAAGCGTATTTCTGATTATAGGAACTCAGGGGATTCACTTTCACCTCAAGCTCGAGCGTTGATACTTGAGGAGTGCGACAAAGCAGAGCAGTGGCTAACAGAGAAAAACCAACAACAAGAGTTGTTACCGAAAAACATTGACCCTTTACTGTGGTCAAGTGAGATCAGAACTCGGGTAGAAGATTTTGACAAGACATGCCAGGGGATCTTGGGACCTGTGTCTTCTCATACACATTCAGGAGATTCCAAGGAACCAAACCATCACAATTCTTCTGATAACCATCATTCTTAA 2313 40.9 MSVVGFDIGNENCVIAVSRQRGIDVLLNEESQRETPAVICFGEKQRFLGSAGAASATMNPRSTISQVKRLIGRNFGEPDVQKDLKMLPFKTSEALDGSILVHVKYLGETHTFTPVQIMAMLLAHLRDVAEKNLGAPFSDCVIGIPSYFTDLQRRLYWNAAAIAGLKPLRLMHDCTATALSYGIYKTDFSTTGPIYVAFVDIGHCDTQVSIVTFEPGHMRIMSHTYDRDLGGRDFDEVLFSHFVAEFKKNYDIDVNSNVKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLASGLLERISTPCTRALADAGLTVEKIHSVELVGSGSRTPAITRLLTSVFKREPSRKLNASECVARGCALQCAMLSPVFRVREYEVQDSSPFSIGFSSDAGPISLGLNNVLFPKGQHIPSTKVLSFHRNSLFHLEAVYTNPDELPPGMSSKIGCFTIGPIQGSNNSNSRVKVRVQLNMNGIITVESATFVEDNVDEQMLRRDAAHSNTEKMETEFVDSSHSEVLKISFPGKLSTKRIDIPVSEHIYGGMTKAEISEAQERELQLAQQDKNMEQAKNKKNALESYVYEMRNKLFNTYRSFVSDQEREGISSSLQQTEEWLYEDGDDETESAYSSKLDDLKKVVSISVLVDPIINRYEDEEARAQAKAHLLKRISDYRNSGDSLSPQARALILEECDKAEQWLTEKNQQQELLPKNIDPLLWSSEIRTRVEDFDKTCQGILGPVSSHTHSGDSKEPNHHNSSDNHHS 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18571465 18577644 - Lsi04G012030.1 Lsi04g01203 661252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01203 770 Gene3D - 186 360 - -
Lsi04g01203 770 CDD HSPA4_like_NDB 2 381 - -
Lsi04g01203 770 Coils Coil 657 677 - -
Lsi04g01203 770 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 764 - -
Lsi04g01203 770 Gene3D - 554 672 IPR029048 -
Lsi04g01203 770 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 587 IPR029047 -
Lsi04g01203 770 Coils Coil 560 596 - -
Lsi04g01203 770 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lsi04g01203 770 MobiDBLite consensus disorder prediction 754 770 - -
Lsi04g01203 770 Gene3D Actin; Chain A, domain 4 230 313 - -
Lsi04g01203 770 Pfam Hsp70 protein 3 648 IPR013126 GO:0005524|GO:0140662
Lsi04g01203 770 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 551 IPR029047 -
Lsi04g01203 770 Gene3D - 38 113 - -
Lsi04g01203 770 MobiDBLite consensus disorder prediction 742 770 - -
Lsi04g01203 770 SUPERFAMILY Actin-like ATPase domain 191 381 IPR043129 -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 2 15 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 332 348 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 472 488 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 140 160 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 363 383 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 30 42 - -
Lsi04g01203 770 PRINTS 70kDa heat shock protein signature 388 407 - -
Lsi04g01203 770 PANTHER HSC70CB, ISOFORM G-RELATED 1 764 - -
Lsi04g01203 770 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 556 648 IPR029048 -
Lsi04g01203 770 Gene3D - 5 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01203 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101219607 1353.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02782 Lsi-Chr2:34059972 Lsi04g01203 Lsi-Chr4:18571465 0 dispersed
Lsi04g01203 Lsi-Chr4:18571465 Lsi11g00825 Lsi-Chr11:10226844 6.94E-85 dispersed
Lsi04g01203 Lsi-Chr4:18571465 Lsi01g01415 Lsi-Chr1:12295409 1.21E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01203 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.441261 0.0 0.0 0.0 0.0 0.0 0.0