Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01206 ATGGCTATTCATTTCCGAACCCGGATCAGATTTCCAGATTACTCGAACCAAAAACCCTGTGGCTATTTCTTCTTCATTTGCCGATTCATCTCCAAATCTCTGTCTGAAAGCACTTACGATCCTCCATTTTCTCCTGTTTCCAAGCTCCGAAAGGCAAAGAAGAAGAAGACCCACGATGGAAATTCGAATTCAAACGAAAACCCCACTCTCCCGCTCCAGTCGGATCTTCCTTTCGACTTCTTCCACTCCTACTCTGAGACCAATCGCTCAGTTACCCCTATAGGCTATCGAGAATCGCCCAAATTCTCACCGTTTGGACCGGGCCGGCTCGACCGGAAATGGACTGGAACTTCGGCCCCTGCAGAGGTGGAAGTGAAAATAAATGAAGTGTTAGAGGAGAGGAAACGGATTCTTGGAGACCCATTATCGGAGGAGGAAGTTGCAGAGCTTGTGGAACAGTATCGGCATAACAATTGCTCTCGGCAAATCAATCTTGAAAGAAGGAATAAAGGGTTTGAGTGCTTGGTTTTGCTTTTGGCTCAAATAGGAAAGGGGGGAGTTACTCATAATATGTTGGATGACATACACAACCATTGGAAAAGAGCTGAAGCTGTGAGGATCAAATGCTTGGGAGTGCCAACTCTTGATATGGACAATATATGTTTCCACCTTGAGGACAAGTCTGGTGGGAAGATTATATATCGACATATCAACATCCTTCTTTTATACCGTGGTCGGAACTACGATCCCAAGAATCGACCAGCTATCCCTCTTATGTTGTGGAAACCTTATGCACCAATATATCCAAAGCTTGTGAAGAATGTGGCAGATGGCTTGTCATTTGATGAAACAAAGGAGATGAGAAACAGAGGATTGAATTCTCCTCCTCTAATGAAACTTACAAGGAATGGTGTATATGTCAACGTCATGGACAGAGTGAGAGAGGCCTTCGAGTTCGAGGAGGTGGTTAGACTAGATTGCACTCACGTTGGTGGCAGTGACTGCAAACAGATAGGTGTTAAATTAAGGGATTTGGTACCTTGTGTGCCCATTTTATTCAAGGATGAGCAGATTATTCTATGGAGAGGGAAGAAAGATCATGAAGAGTACATGAACTCATAG 1122 44.21 MAIHFRTRIRFPDYSNQKPCGYFFFICRFISKSLSESTYDPPFSPVSKLRKAKKKKTHDGNSNSNENPTLPLQSDLPFDFFHSYSETNRSVTPIGYRESPKFSPFGPGRLDRKWTGTSAPAEVEVKINEVLEERKRILGDPLSEEEVAELVEQYRHNNCSRQINLERRNKGFECLVLLLAQIGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRHINILLLYRGRNYDPKNRPAIPLMLWKPYAPIYPKLVKNVADGLSFDETKEMRNRGLNSPPLMKLTRNGVYVNVMDRVREAFEFEEVVRLDCTHVGGSDCKQIGVKLRDLVPCVPILFKDEQIILWRGKKDHEEYMNS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18610628 18613564 - Lsi04G012060.1 Lsi04g01206 661255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01206 373 ProSiteProfiles CRM domain profile. 277 373 IPR001890 GO:0003723
Lsi04g01206 373 SMART CRS1_YhbY_2 279 362 IPR001890 GO:0003723
Lsi04g01206 373 SMART CRS1_YhbY_2 142 244 IPR001890 GO:0003723
Lsi04g01206 373 MobiDBLite consensus disorder prediction 37 72 - -
Lsi04g01206 373 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 21 370 - -
Lsi04g01206 373 Gene3D - 178 255 IPR035920 -
Lsi04g01206 373 SUPERFAMILY YhbY-like 279 369 IPR035920 -
Lsi04g01206 373 SUPERFAMILY YhbY-like 180 253 IPR035920 -
Lsi04g01206 373 Pfam CRS1 / YhbY (CRM) domain 180 244 IPR001890 GO:0003723
Lsi04g01206 373 Pfam CRS1 / YhbY (CRM) domain 282 362 IPR001890 GO:0003723
Lsi04g01206 373 Gene3D - 279 373 IPR035920 -
Lsi04g01206 373 ProSiteProfiles CRM domain profile. 156 255 IPR001890 GO:0003723
Lsi04g01206 373 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 21 370 IPR044599 GO:0000373
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01206 - - - csv:101214195 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01206 Lsi-Chr4:18610628 Lsi05g01993 Lsi-Chr5:27012460 3.46E-112 dispersed
Lsi04g01206 Lsi-Chr4:18610628 Lsi06g01329 Lsi-Chr6:23873869 1.39E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01206 Lsi_Chr04 FPKM 135.461151 139.83075 111.606865 119.9767 217.972977 234.709412 199.597 119.016724 117.218536 112.060806