Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01207 ATGCATGATTTCTGCTTCACAATCCCTTATGGATTGATTTTAGTTGGTGGTGGCATTTTTGGCTACCTCAGGAAGGGGAGCACAGCATCGCTAGCTGGAGGTGTGGGTACTGGATTGGTTCTAATTCTGGCTGGATACTTGAGCCTTGGAGCTTTCAAGAAGAAGAAGAACTCCTATCTTGCTCTGATTCTTGAGACAGGAGAGCGCTGCCTTAGCCTATGTGCTGCAACCTACCTTCCCATCAGATCAAATGCACACCATTGCCCCTCCATTGGGGCAGGGGAGGAAGGTGAAATGTCGAGTCAAACTCTAGGTGGACTTGCTTTTATGATGCCTGACTTATGTAGCGGCGCACTCACGTGGGTGATGGGACAACGGTACTTACAGACTTCAAAGATCATGCCAGCCGGAGTTGTAGCTGGACTCAGGTAA 432 49.07 MHDFCFTIPYGLILVGGGIFGYLRKGSTASLAGGVGTGLVLILAGYLSLGAFKKKKNSYLALILETGERCLSLCAATYLPIRSNAHHCPSIGAGEEGEMSSQTLGGLAFMMPDLCSGALTWVMGQRYLQTSKIMPAGVVAGLR 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18613542 18619283 + Lsi04G012070.1 Lsi04g01207 661256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01207 143 Pfam Transmembrane proteins 14C 6 142 IPR005349 GO:0016020
Lsi04g01207 143 PANTHER TRANSMEMBRANE PROTEIN 14, 15 108 142 IPR005349 GO:0016020
Lsi04g01207 143 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 67 IPR005349 GO:0016020
Lsi04g01207 143 PANTHER PROTEIN FATTY ACID EXPORT 5-LIKE 108 142 - -
Lsi04g01207 143 PANTHER PROTEIN FATTY ACID EXPORT 5-LIKE 1 67 - -
Lsi04g01207 143 Gene3D - 1 143 IPR044890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01207 - - - csv:101213707 162.155
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g495 . . Bda07g00358 Bda09g00397 . Bpe08g01127 . . . . Cma01g01135 . . . . . Cpe02g00766 . . . . . . . . . . . . . . . . . . Lsi04g01207 . . . Blo07g00910 . Bda05g00726 . Bpe11g00543 . Bma07g01301 Bma14g00343 . Cmo01g01186 . . . . Car16g00546 . . . . . . . . . Cla05g01494 Cam05g1610 . Cco05g1639 Clacu05g1590 Cmu05g1493 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005657 3 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01207 Lsi_Chr04 FPKM 8.414593 9.585361 13.345946 12.733743 10.645604 8.858905 11.029119 16.308445 15.717534 16.811943