Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01209 ATGATCATTTACCTAACAGTCTTCTGTCTTGTAATCCCCATCTTCCTCTTCCTTCTCAGAGGAAGAAGAAAATCGTCCAAAAACCTTCCTCCAGGTTCGCTAGGGTTTTTTCCATTGATCGGGCAGAGTCTGAGTCTCCTCCGCGCCATGCGAAGCAACACCGCAGAAGAATGGGTGCAGCAGAGGATGAGAAAGTACGGGGCGATCTCGAAGCTAAGCCTGTTTGGAAAACCCACAGTGTTCATCGGAGGACAGAGCGGTAACAAGTTGATTTTCAGCGGCGATTGTGGAGTAGTTTCGAATCAGCAAAATGAGTCTCTTAGGGCAATTTTGGGGGAAAGCAATTTGTTGGAGCTGAGTGGAGAAGATCACAGGCGTGTGAGAAATGCGCTGGCTTCGTTCTTGAAGCCGGAATGTTTGAAGCAATATGTGGGCAAAATGGATCAAGAAATCAGAGAACATATCAAGATGCATTGGCAGGCCAAACAAGAGATTACCGTATTGCCATTGATGAAAACTCTCACCTTCAACATTGTATGTTCTCTTCTCTTTGGTCTTGAGCAAGGTATGAGAAGAGAAAGAATGATAGAATGGTTTCGAGTAATGATAGGCGGAGTATGGTCGATCCCAATAAACTTTCCGTTCACGAGGTACAACCAAAGCCGACGTGCGAGTAGGAGAATCCAAGAGATGCTTAAGGAACTGTTGGATGAAAAGAGAGTTGAATTAGAAGAAAAAGGTGGTTCCTCACACCAAGATCTAATCACTTGTTTGCTAAGCATCAGGAATGAAGAAAATGAAGTAATATTGAGTGAGAAGGAAATTGTGCACAATATTATGTTGGTAATGGTTGCTGGATTTGATACTTCATCGGTTCTTATTACATTCATGATGCGGTTTTTGGCTAATAATCCAACTGTTTATGCATCTGTTCTTCAAGAACAAGAAGAGATAGCAAGAAGTAAGAAATGTGGAGAGTTGCTTACTTGGGAAGATCTTGCCAAGATGAAGTACACATGGAGAGTTGCATTAGAGACCCTAAGGTTGGTGGCACCTATATTTGGAGGCTTCAGAAAGGCTATGAATGATATTGAATTTGGTGGCTACCTTATTCCTAAAGGATGGCAAATATTCTGGACATCACCAGTTACTCATTTGGATGACACCATATTTAGAGATCCATTGAAGTTTGACCCAAATAGGTTCGAGAATCCAGCGTCGATTCCACCGTATTGCTTCGTTGGATTTGGCGGCGGTCCGAGAATTTGTCCAGGTAATGAGTTTGCAAGGATTGAGACTCTTGTTACCATCCATTACTTGATCACCCAATTCACATGGAAGCTACTTTTGGATGACCATTTTATTAGAGATCCAATGCCAACACCTACCAAAGGAATGCCTATCAAAATCTGTCGTAGCGTCGCGACGCTGTCTTGCTACATCACGACGCTGCATGCAAACTCTAATAGG 1470 42.93 MIIYLTVFCLVIPIFLFLLRGRRKSSKNLPPGSLGFFPLIGQSLSLLRAMRSNTAEEWVQQRMRKYGAISKLSLFGKPTVFIGGQSGNKLIFSGDCGVVSNQQNESLRAILGESNLLELSGEDHRRVRNALASFLKPECLKQYVGKMDQEIREHIKMHWQAKQEITVLPLMKTLTFNIVCSLLFGLEQGMRRERMIEWFRVMIGGVWSIPINFPFTRYNQSRRASRRIQEMLKELLDEKRVELEEKGGSSHQDLITCLLSIRNEENEVILSEKEIVHNIMLVMVAGFDTSSVLITFMMRFLANNPTVYASVLQEQEEIARSKKCGELLTWEDLAKMKYTWRVALETLRLVAPIFGGFRKAMNDIEFGGYLIPKGWQIFWTSPVTHLDDTIFRDPLKFDPNRFENPASIPPYCFVGFGGGPRICPGNEFARIETLVTIHYLITQFTWKLLLDDHFIRDPMPTPTKGMPIKICRSVATLSCYITTLHANSNR 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18629166 18633813 + Lsi04G012090.1 Lsi04g01209 661258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01209 490 Coils Coil 218 238 - -
Lsi04g01209 490 Pfam Cytochrome P450 31 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 416 425 IPR017972 GO:0005506|GO:0016705
Lsi04g01209 490 PRINTS P450 superfamily signature 341 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS P450 superfamily signature 414 423 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS P450 superfamily signature 423 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 274 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 413 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 294 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PRINTS E-class P450 group I signature 423 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PANTHER CYTOCHROME P450 26 10 475 - -
Lsi04g01209 490 Gene3D Cytochrome P450 20 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01209 490 PANTHER OS07G0520300 PROTEIN 10 475 - -
Lsi04g01209 490 SUPERFAMILY Cytochrome P450 23 470 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01209 - - - csv:101208631 850.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01209 Lsi-Chr4:18629166 Lsi06g00651 Lsi-Chr6:9732088 7.24E-117 dispersed
Lsi04g01209 Lsi-Chr4:18629166 Lsi04g01210 Lsi-Chr4:18669643 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g493 Blo03g00567 . Bda07g00356 . . Bpe08g01128 . . . . . . . . . . . Bhi09g01888 . . . . . . . . . . . . . . . . . Lsi04g01209 . . . . . . . . . Bma07g01302 . . . . . . . . . . . . . . . . . Cla05g01495 Cam05g1612 . Cco05g1641 Clacu05g1593 Cmu05g1495 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01209 Lsi_Chr04 FPKM 25.04884 28.312332 41.367943 38.717701 23.028137 23.474537 25.091232 20.426941 20.982378 21.934593