Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01210 ATGATAACCATAATCCTTCTTCTCATCACCATCTTCCTCTTCCTCAGATTTAGATCAACATTCTCCTCCTCCGAGGCCGCGAAAAACCTTCCTCCGGGGTCACTTGGGGTTCCATTTATAGGCCAAAGCCTGAGCCTTCTTCGAGCTATGCGAACAAACTCAGCAGAGCAATGGCTGCAGAAGAGAGTGGCCAAATACGGGCCAGTTTCGAAGATGACGCTGTTCGGGAAGCCGACGGTGTTTGTAAATGGGGCAGCGGCGAATAAGGCGGTGGTGTTTTCGGGGGAGGAGGGGACGGTGTCGAGCCGGCAGATAGAGTCGTTAAAGAGGATTTTGGGAGAGAGGAATTTGACGGAGCTGAGTGGTGAGGATCATAAGAGAGTTAGAGGGGCGCTGGTTTGGTTCTTGAGGCCTCAGAGCTTGAAAGGCTTTGTGGGGAAAATGGATGGAGAAGTGTCACCATTGATGAAAACTCTAACATTTGACATCATATGCTCTCTCCTGTTTGGCATTGAAGAAGGACCAACAAGAAAAAGCATAATAGAATGCTTCAAAACAATGGTGGATGGCATTTGGTCTGTTCCAATCAACTTGCCATTCACAAGGTATAGCCACAGCCTCAAAGCAAGTGCAAAAGCTCAACAGATATTGAAGCAACTTTTGAAAGACAAAACACAGACAATGGAAGAAGAACAACAAGAAGATGATGATAAAGACCTAATTACTTATCTGTTTAGCATCAAGAACAAAGACAAAGAACAAGCTTTGAGTGAGGAGGAAATTGTGCACAATATCATCCTTCTAATGATTGCTGGACATGACACAACATCCATTTTGATTACACTTATGCTTAGGGTTTTGGCTAGAAACCCAACTGTTTATGCAGCTGTTCTTCAAGAGCATGAAGAAATAGCAAGAAACAAAGAAAGTGGGGAGGCACTCAGTTGGGAAGATGTTTCCAAGATGAAGTACACATGGAAAGTGGCAATGGAAACCTTGAGACTTTACCCACCTGTATTTGGAGGGTTTAGAGTGGCCCTTAAAGATATTCAATTAGGTGGATACACAATTCCAAAAGGATGGCAAATATTTTGGGCAGCACCAATGACCCATTTGGATGAGACAATATTTGGAGATCCAGAAAAGTTTGAACCAAGTAGATTTGATCAAAACCAAACACCAATTCCACCCTTTAGTTTCATTGCTTTTGGTGGAGGACCAAGAATTTGCCCTGGCTATGAATTTGCAAAGCTTGAAACTCTTGTCACTATCCATTACCTAATCACTCAATTCACTTGGAACCTCACTTCAGACGATTTCTTGACTAGAGATCCTACTTTGATGCCCAACAAAGGTCTCCCCATCCAGATTTATCCCAAATTATAA 1386 43.15 MITIILLLITIFLFLRFRSTFSSSEAAKNLPPGSLGVPFIGQSLSLLRAMRTNSAEQWLQKRVAKYGPVSKMTLFGKPTVFVNGAAANKAVVFSGEEGTVSSRQIESLKRILGERNLTELSGEDHKRVRGALVWFLRPQSLKGFVGKMDGEVSPLMKTLTFDIICSLLFGIEEGPTRKSIIECFKTMVDGIWSVPINLPFTRYSHSLKASAKAQQILKQLLKDKTQTMEEEQQEDDDKDLITYLFSIKNKDKEQALSEEEIVHNIILLMIAGHDTTSILITLMLRVLARNPTVYAAVLQEHEEIARNKESGEALSWEDVSKMKYTWKVAMETLRLYPPVFGGFRVALKDIQLGGYTIPKGWQIFWAAPMTHLDETIFGDPEKFEPSRFDQNQTPIPPFSFIAFGGGPRICPGYEFAKLETLVTIHYLITQFTWNLTSDDFLTRDPTLMPNKGLPIQIYPKL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18669643 18676529 + Lsi04G012100.1 Lsi04g01210 661259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01210 461 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 403 412 IPR017972 GO:0005506|GO:0016705
Lsi04g01210 461 PANTHER CYTOCHROME P450 26 5 458 - -
Lsi04g01210 461 Coils Coil 214 234 - -
Lsi04g01210 461 PRINTS E-class P450 group I signature 366 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS E-class P450 group I signature 400 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS E-class P450 group I signature 260 277 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS E-class P450 group I signature 410 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS E-class P450 group I signature 280 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS P450 superfamily signature 327 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS P450 superfamily signature 401 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS P450 superfamily signature 410 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PRINTS P450 superfamily signature 271 288 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 Gene3D Cytochrome P450 20 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 SUPERFAMILY Cytochrome P450 28 459 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 Pfam Cytochrome P450 150 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi04g01210 461 PANTHER OS07G0520300 PROTEIN 5 458 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01210 - - - csv:101212103 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01210 Lsi-Chr4:18669643 Lsi06g00651 Lsi-Chr6:9732088 1.42E-92 dispersed
Lsi04g01209 Lsi-Chr4:18629166 Lsi04g01210 Lsi-Chr4:18669643 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g491 . Blo03g01447 Bda07g00354 Bda09g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01210 . . . . . . . . . Bma07g01303 . . . . . . . . Cpe14g00747 . . . . . . . . Cla05g01497 Cam05g1614 . Cco05g1643 Clacu05g1597 Cmu05g1496 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01210 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0