Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01217 ATGAGTTCTCAAGCACCCAAATCGTCGAGACCTTCAAAACCCCCAAATCAATCGCCACCCACATCCAGATCCTCGGCTTCTTCTCTATCATCCCATCTCGCCATGGTTGAACTCAAGCAAAGGATTCTCACCGCTCTCTCTAAGCTTTCCGATCGAGACACCCACCAGATCGCCATTGAGGACCTGGAGAAAATTATCCAGTCCATTTCCCCCGAAGCCATTCCTATGCTCCTCAATTGCCTCTACGATTCCTCTGCTGACCCGAAACCCGCTGTGAAGAAAGAGTCATTGCGGCTTCTAACTGTTGTTTGTGCTTCCCATAGCGATTCTACTTCCACCCATTTGACTAAAATTATAGCCCACGTCATAAGGAGGGTTAAGGATTCGGATTCTGGTGTGAAGGATTCGTGTAGAGATGCCATTGGTGCACTCTCGGCGCAGTACTTGAAAGGGGATAGTTCTGGTGGTGATAATGGAGGTCTTGGCTCTGTGGTGGCATTGTTTGTTAAGCCACTGTTTGAGGCAATGGGAGAACAGAACAAGGGCGTTCAATCTGGGGCTGCATTGTGTATGGCTAAGATGGTGGAGTGTGCGGCCAGCCCACCCATCATGGCGTTTCAGAAGCTTTGCCCCAGGATTTGTAAGTTGCTCAACAATCCAAATTTTTTGGCAAAGGCTTCACTCCTCCCTGTGGTATCCAATTTATCACAGGTTGGTGCTATTGGACAACAGAGCTTGGAACATTTGCTACCAAGTATTCATGAGTTACTTGGGAGCACTGATTGGGCAACACGCAAGGCAGCAGCTGATGCACTAAGTGTGTTAGCATTGCATTCAAGTAATTTCATCGCAGATGGAGGTGCTTCCACTTTGGCAGTACTTGAGGCTTGCCGTTTTGACAAGATAAAACCCGTTCGAGACAGCATGACAGAGGCACTACAGCTATGGAAAAAACTTGCTGGGAAAACAGATGGTGCTGCAGAAAGTCAGAATGCATCTCAAGAAGGTGAAAACCATGAATCAGCGGAGTTGTCTCAAAAGTCTGACCTGAAAAGTGCAAATTCCCCTCAGGGAGGGAGGTCACTAGACAAAGATAAATCTGAGGAATCTATCCCCGTATCAAATTCAGCTTCGAAACCCAAATGCGGTAGTATTTCAGATAAAGCGGCTGTATTATTGAAGAAGAAAGTACCTGCTTTAACTGACAAAGAGTTGAACCCTGAGTTCTTTCAGAAACTTGAAACTAGGGGGTCTGGGGATTTGCCTGTGGAGGTGGTTCTTCCTCGCAGACATGCCAGTTCTTCAAACACAAATGATGAGAAATCAGAGCCAGATGATTCAAATGCTGGGGCAAGATCAACTCGTGTTGAAAACGCCAACACAGATGATTTTCAAAGAGCATTTAATAAGTTTCGAGACTCTGAAAGAGCTCAAATGGCTAAGATGCGAGATTATGATGATGTTGAGCGAGATAAATGGCATGAGGGGAAAATAAATGGAAGAGACTCCAGAACAAGAGCATACAATGTGAATGATCAAAATGACATATCTCAGCGGGAATCTTCTGGTGCTCGTTTGGACTTCTCCAAAATGGATGCCCAATCGGAAAGTGCCTTCATAAATAACAAAGGAAGTTGGTCCGCTATCCAGAGGCAGCTATTGCAGTTGGAGAGGCAACAGGCACATTTGATGAACATGTTGCAGGATTTCATGGGAGGCTCTCATGATAGCATGATAACTTTGGAAAATAGAGTTCGTGGACTTGAGAGAGTTGTCGAAGACATGGCACGTGATTTATCTGTGTCTTCAGGTAGGAGAGGGAACTTTCCTCTAGGATTTGAAGGATCGTCTAATAGGCATCTAGGCAAGTATAGTGGATTTTCGGACTATTCGGGTGCCAAGTTTGGACGAAACAATGATGGAAGAGTTTCTTTTGGAGAGAGGTTCGTTCAATCAGAAGGAATTGGTTCAAACATGAGAGGAAGGAGTGCTGCATGGAGACCTGATATGAATGAGACTTGGGATTATCCTGCTTACATGTCGAGAAATGGGCAGATGGGATCTAAGAGAACTTTAGATGCTGGCATCGACAATAGGTCATCTAAATCAGAACAGGAAAGCGACCAAGGTGGAGGTAACAGAAGAGCCTGGGACAAAGGTGCTGGACCTTTAAGACTTGGTGAGGGGCCATCTGCAAGAAGTGTTTGGCAAGCATCAAAAGATGAAGCAACCTTAGAAGCCATTCGGGTAGCTGGGGAAGACAACGGAATATCTAGGACTCCGAAAGTGGCGATTCCCGAGTTGACTGCAGAAGCATTGGCAGATGACAACGCTGGTCAAGAACGGGATCCAGTATGGACTTCTTGGACTAATGCAATGGATGCCCTTCAGGCAGGTGATGTGGACACGGCCTATGCTGAAGTTCTCTCTACGGGGGATGACATCTTGCTCATAAAGCTAATGGAAAGAACTGGTCCCGTGGTCGACCAAATCTCAAATGAGATAGCCGTTGAGATCTTCCGTGCCGTGGGACAATTTCTACTCGAGCAGAACTTGTTCGATATATGTTTATCTTGGATTCAACAGTTGGTAGAAATTGTTTTGGACAATGGACCTGATTGTGTGGGGATTCCTATGGAAGTGAAGAAAGAACTACTGTTAAATTTTCACGAAGCTTCTTCAACAATGGATCCACCTGACGATTGGGAAGGTGCTTCACCTGACCAACTTTTGTCACAATTGGCCTCTGCTTGGAGAATTGATATTGGACAACTCCAATAG 2781 45.63 MSSQAPKSSRPSKPPNQSPPTSRSSASSLSSHLAMVELKQRILTALSKLSDRDTHQIAIEDLEKIIQSISPEAIPMLLNCLYDSSADPKPAVKKESLRLLTVVCASHSDSTSTHLTKIIAHVIRRVKDSDSGVKDSCRDAIGALSAQYLKGDSSGGDNGGLGSVVALFVKPLFEAMGEQNKGVQSGAALCMAKMVECAASPPIMAFQKLCPRICKLLNNPNFLAKASLLPVVSNLSQVGAIGQQSLEHLLPSIHELLGSTDWATRKAAADALSVLALHSSNFIADGGASTLAVLEACRFDKIKPVRDSMTEALQLWKKLAGKTDGAAESQNASQEGENHESAELSQKSDLKSANSPQGGRSLDKDKSEESIPVSNSASKPKCGSISDKAAVLLKKKVPALTDKELNPEFFQKLETRGSGDLPVEVVLPRRHASSSNTNDEKSEPDDSNAGARSTRVENANTDDFQRAFNKFRDSERAQMAKMRDYDDVERDKWHEGKINGRDSRTRAYNVNDQNDISQRESSGARLDFSKMDAQSESAFINNKGSWSAIQRQLLQLERQQAHLMNMLQDFMGGSHDSMITLENRVRGLERVVEDMARDLSVSSGRRGNFPLGFEGSSNRHLGKYSGFSDYSGAKFGRNNDGRVSFGERFVQSEGIGSNMRGRSAAWRPDMNETWDYPAYMSRNGQMGSKRTLDAGIDNRSSKSEQESDQGGGNRRAWDKGAGPLRLGEGPSARSVWQASKDEATLEAIRVAGEDNGISRTPKVAIPELTAEALADDNAGQERDPVWTSWTNAMDALQAGDVDTAYAEVLSTGDDILLIKLMERTGPVVDQISNEIAVEIFRAVGQFLLEQNLFDICLSWIQQLVEIVLDNGPDCVGIPMEVKKELLLNFHEASSTMDPPDDWEGASPDQLLSQLASAWRIDIGQLQ 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18742527 18749218 - Lsi04G012170.1 Lsi04g01217 661266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01217 926 MobiDBLite consensus disorder prediction 434 450 - -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 1 30 - -
Lsi04g01217 926 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 22 924 - -
Lsi04g01217 926 SUPERFAMILY ARM repeat 37 316 IPR016024 -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 451 465 - -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 695 713 - -
Lsi04g01217 926 Gene3D - 152 303 IPR011989 -
Lsi04g01217 926 Coils Coil 578 598 - -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 421 472 - -
Lsi04g01217 926 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 22 924 IPR033337 GO:0005874|GO:0008017
Lsi04g01217 926 SMART TOG_3 67 308 IPR034085 -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 680 734 - -
Lsi04g01217 926 Gene3D - 37 151 IPR011989 -
Lsi04g01217 926 MobiDBLite consensus disorder prediction 324 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01217 - - - csv:101218802 1703.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01217 Lsi-Chr4:18742527 Lsi08g00760 Lsi-Chr8:15960434 2.01E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g480 Blo03g00570 Blo03g01445 Bda07g00351 Bda09g00392 . Bpe08g01131 . . . . Cma01g01137 Cma09g00942 . Car09g00856 . Cpe06g00759 Cpe02g00763 . . . . . . . . . . . . . . . . . . Lsi04g01217 . Chy04g00971 . . . . . Bpe11g00536 . Bma07g01305 Bma14g00345 . Cmo01g01188 Cmo09g00940 . . . Car16g00548 . . . . . . . . . Cla05g01500 Cam05g1618 Cec05g1622 Cco05g1647 Clacu05g1603 Cmu05g1502 . . . . Cme04g00856
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004874 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01217 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0