Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01219 ATGGTGCAGATTCTTCTCCATTCGTCAGCCCCATTTCTTCTCCAATGCTGTTCTTCTCCTCCTCCTCCTACTTCCTCCAGTTTTCGGGTATTTGCGTTGGCATTAGAAAATTTCGTAACTAGGGGAATGCCTGGGAAAGTAATGTTGGAGAATGGTTTTGAGCAACCTGCTCTAAGAAAGCTTGTGTCCCAGCATGTACTCTCTGGATTTGCTGCTTCATTGATATTTCTCACTCAAACAAACCAGGCCATCTCTGTAGATATACCTCGCCATGAAAACTTGTGTCAGCTTGCAAGTGCAGAGAATGCTGCAAGCCTTCCTTTTGACAATGATTCTGATGGAGGGGGGAGGTTGATGATGATGAGAGGGATGACAGCCAAAAGTTTTGATCCTGTTCGATATTCAGGAAGATGGTTCGAAGTTGCTTCACTTAAACGTGGATTTGCTGGACAAGGTCAGGAAGACTGCCACTGCACCCAGGGTGTATACACATTTGATATGGCCACACCAGCAATACAAGTAGATACCTTTTGTGTTCATGGAAGCCCTGATGGCTATATAACTGGGATAAGAGGGAGAGTTCAGTGTCTTCCAGAGGAAGATTTACAAAAAAACGCAACCGAGCTGGAGAAGCAGGAGATGATCAAGGAGAAATGTTTCCTCCGATTTCCTACATTGCCATTTATCCCTAAGGAGCCATATGATGTCATTGCAACTGATTATGACAACTTTGCTATAGTTTCCGGAGCTAAAGACCTTAGCTTTGTTCAGCTTTGGAATCATCAAGTTTCGAACTTCAAATGGATAAAGCAAACAGTCGCAACTAGTAATGACTTGGACACCATTATCTATTCAAGAACGCCAAACCCGGGACGCGAGTTCATAGATAAGTACAAATCGTACCTGGCGAACTTTGGGTACGATCCAAGCAAAATCAAGGACACTCCTCAAGATTGTGAGGTAATGTCAAATAGTCAGCTAGCTGCAATGATGTCGATGTCTGGAATGCAACAGGCTTTGACAAATCAGTTTCCAGATTTGGGGCTAAAGGCTCCTATTGAACTCAACCCCTTCACAAGTGTATTTGATACTTTCAAAAAGCTACTAGAACTCTATTTCAAGTAG 1125 43.2 MVQILLHSSAPFLLQCCSSPPPPTSSSFRVFALALENFVTRGMPGKVMLENGFEQPALRKLVSQHVLSGFAASLIFLTQTNQAISVDIPRHENLCQLASAENAASLPFDNDSDGGGRLMMMRGMTAKSFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMATPAIQVDTFCVHGSPDGYITGIRGRVQCLPEEDLQKNATELEKQEMIKEKCFLRFPTLPFIPKEPYDVIATDYDNFAIVSGAKDLSFVQLWNHQVSNFKWIKQTVATSNDLDTIIYSRTPNPGREFIDKYKSYLANFGYDPSKIKDTPQDCEVMSNSQLAAMMSMSGMQQALTNQFPDLGLKAPIELNPFTSVFDTFKKLLELYFK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18776307 18780194 - Lsi04G012190.1 Lsi04g01219 661268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01219 374 PANTHER LIPOCALIN 283 374 IPR002345 GO:0036094
Lsi04g01219 374 PANTHER LIPOCALIN 46 259 IPR002345 GO:0036094
Lsi04g01219 374 PANTHER CHLOROPLASTIC LIPOCALIN 283 374 - -
Lsi04g01219 374 PANTHER CHLOROPLASTIC LIPOCALIN 46 259 - -
Lsi04g01219 374 SUPERFAMILY Lipocalins 125 330 IPR012674 -
Lsi04g01219 374 Gene3D - 124 331 IPR012674 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01219 - - - bhj:120085082 606.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g473 Blo03g00573 . Bda07g00349 . . . . . . . Cma01g01139 . . . . . Cpe02g00761 . . . . . . . . . . . . . . . Cone9ag0091 . . Lsi04g01219 . Chy04g00975 . . . . . Bpe11g00534 . . Bma14g00347 . Cmo01g01190 . . . . Car16g00551 . . . . . . . . . Cla05g01504 Cam05g1620 Cec05g1624 Cco05g1649 Clacu05g1606 Cmu05g1505 . . . . Cme04g00853
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009675 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01219 Lsi_Chr04 FPKM 5.246588 4.840479 4.317508 6.50005 4.576612 4.426255 5.34548 8.600423 10.177107 9.495975