Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01225 ATGAAAGCTCCCCCACTGACCCCATCACTCCTAAACAAGAAAAGTTTTGAAGTTCAATCGTTGATTTGTTGGGTTTTTCGTTGGAAATTTGTGATACCCAGTTGGATTTCTACCATGATCTGTGCAGTGAAACAATCTTCTAGGGGTATCCATTGCTCCGATGGTGTTATTCGGAGCAAAATCTCGGTTCCCTCTCAGCGATCCTCGTTTCTTCCACCTCTTCCGGTGCAAAAACCTCGAAACTCCGCTGTTTCTGTTCATAAGGCTGTACAAGTTTCTTCGCTTGAGAATTTTGGATCACTTGGGTTTCGTAAAGCTAATCTGATCAAATGTGAAGCTTACGAGGCTGAGCGATCGCAGCCGATCGAATCGAGCATTGAGTTGCCGCAAAGTCAGGTCCCTTCCGAGGCCGCGAAGAAGGTGAAAATTGGATCCTACTTCGCTCTTTGGTGGGCTTTGAACGTGGTTTTCAATATCTATAACAAGAAAGTTTTGAACGCTTACCCATATCCATGGCTGACCTCGACTCTGTCGCTTGCCGCTGGATCTCTGATCATGTTGATCTCATGGATGACGAGAATTGCCGAGGCGCCCAAAACCGATTTCGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCCCATACAATTGGACATGTTGCTGCAACCGTGAGCATGTCAAAGGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGTGTATTGGTTTCAAGGTTCTTGTTGGGTGAGACCTTCCCGCTACCTGTCTACTTGTCACTCCTCCCGATCATCGGTGGGTGTGCTCTCGCTGCTGTGACCGAGCTCAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCAAACTTGGCATTTGTATTCCGTAACATATTTTCGAAGAGGGGCATGAAGGGAAAATCTGTTAGCGGGATGAACTACTATGCATGTTTATCGATTTTGTCTTTGTTACTCTTGACGCCATTTGCATTTGCTGTGGAAGGACCACAATTGTGGGCTGCTGGATGGCAAACAGCAGTTTCTCAAATTGGACCTCATTTCGTTTGGTGGGTTGCAGCGCAAAGTATATTCTACCATCTCTATAATCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACGTTTAGCGTTGGAAACACCATGAAACGTATATCAGTCATAGTTTCTTCCATCATCATCTTCCGCACCCCTGTGCAGCCAGTCAACGCTCTCGGAGCTGCCATTGCAGTTCTCGGAACCTTCATATATTCGCAGGCAAAGCAATGA 1305 45.9 MKAPPLTPSLLNKKSFEVQSLICWVFRWKFVIPSWISTMICAVKQSSRGIHCSDGVIRSKISVPSQRSSFLPPLPVQKPRNSAVSVHKAVQVSSLENFGSLGFRKANLIKCEAYEAERSQPIESSIELPQSQVPSEAAKKVKIGSYFALWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLLLTPFAFAVEGPQLWAAGWQTAVSQIGPHFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAVLGTFIYSQAKQ 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18936200 18940652 - Lsi04G012250.1 Lsi04g01225 661274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01225 434 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 142 433 IPR004696 GO:0016021|GO:0022857|GO:0055085
Lsi04g01225 434 PANTHER SOLUTE CARRIER FAMILY 35 66 434 - -
Lsi04g01225 434 Pfam Triose-phosphate Transporter family 142 430 IPR004853 -
Lsi04g01225 434 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 66 434 - -
Lsi04g01225 434 SUPERFAMILY Multidrug resistance efflux transporter EmrE 184 277 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01225 Lsi05g00616 CCT
Lsi04g01225 Lsi05g00616 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00376 Lsi-Chr2:3252077 Lsi04g01225 Lsi-Chr4:18936200 8.46E-54 dispersed
Lsi02g01577 Lsi-Chr2:21666721 Lsi04g01225 Lsi-Chr4:18936200 4.15E-44 dispersed
Lsi04g01225 Lsi-Chr4:18936200 Lsi05g00617 Lsi-Chr5:7593979 0 dispersed
Lsi01g00289 Lsi-Chr1:2560564 Lsi04g01225 Lsi-Chr4:18936200 3.68E-53 transposed
Lsi01g00413 Lsi-Chr1:3525649 Lsi04g01225 Lsi-Chr4:18936200 9.76E-179 transposed
Lsi04g00366 Lsi-Chr4:3660619 Lsi04g01225 Lsi-Chr4:18936200 1.36E-47 transposed
Lsi04g01225 Lsi-Chr4:18936200 Lsi05g00616 Lsi-Chr5:7589459 1.22E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01225 K15283 - csv:101220046 732.635