Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01226 ATGGTGGATCGAGACCGGGATTGGGATTTTCATCTCAGAACCTTATCCAACAGTGCTAGAGACTCGAATGTCGCCAACGATCCCGCTTCTGATCCTAATATCCTTCAATCAGTTAAAAGGCTATATGAATTGTGCAAAGCTGAGAATTCTGAGGATTTGGTGGCTCGGGTTTATCCTCAGTTTAACAAGATTTTTCAGCGTTCAGTGTCGTCCCTGTCTCAATCTGGAACTTCTAATGGCCTCCTCTTACTGGTGTTCTTTCTTGCCATTCTTCAATTTTTCATTGATTTTGGTGAAGTAGTCTTACATGATGCTGATCCCAGTCTGAAGACATTTTTCCGTTCATGTCTGAGCCGGGGAATCTGTACTGCAGAATTAAATTTGGCTGGAAAAGCTTCCTCAATCTATTATCTGAGGACTGAGGTCCCTGAAACCAATAAGGAGAAACAAGAAGTCATGCATACCAATGCTATGGAACCGGGTAGGAGCCTAGGACAAGCACAAGCACAAGCATACAGACAATTAACTACCCAAGCAACTAAATCAGTAACTGGGATCCTGCTTTGTATTGCTCTTTCGGATTACTTTTCACTTGTAAATCCAATTGTTGCAGAAGCAGTTCTAGAATTTCTGAATGAAAATCAGAATAAATTTGTTACTTATCCAATTGTTGCAGAAATAGTTTTGGAATTTCTGAATGCAAATCGCAATAAATTTCTTACTTCCTTTCCTACACTGCTGCCACAGTTCTTCCCATTGCTGCTAAAGCTGATTGCGTGGAATGGAGAAAAGTTAGAGAAACCATTTCTGAAGATCTTTCCAGCATTGATTTCTCCTGGGTCTTTTCTTCCACTGTTTCCATCTCTCATGGATTTCCCTATACTGGTAGTTGCATTGGAAAGGGTAGAGCGCTGCTCTGGATCACTAGTTGGAAATAGCATAGCTTCAATCCAGAAGAGTAAAGCTCCTGAGATGTTACTTGCACTCATGGATGAGGCTTACACTGGTTCAACCATCGGGGATGGAGGAGGAGACTCTGAATCCGAGGATAGCAGCACAATAGATGTTGCTGATCCTCTCTTCCTTGAACTTTTAAAGGATGAAAATGATGGTCTATCGGTACGGGAACGACATTGGAATTCTCCTGGGATGACTGCAGTAATTCAGACTGCATTAAACACTGCTCAATCTGATAGGCTGAAACAATTGCTGAACATGACACCTCGGATTCTTGATGTCTACTTTTCTGTGGCGCTGCGAGAGGTCAACAATTCATTAATCTGTGCGTTGATTCCTCTACTTATGTCAAGAAACTCAATACTGTTTCCTGACAAAGATTTCTCCTATAAGGTGTGCGTTGAATATGAATTATGTTATGTTCTTCCTGTTGGTAGCTTTGATACATATTGGTATTACACTGTGACTTCGGTTCGTAAGAGGCTCCTAGAATTTATGCTTGCTGCATTTCAGCGGTCGCCCACCTTCATTGCACTTCTCAAGAAACCTATAACGGACCGCCTTGGTGAAGCTTATGAGAATCCTGCAAAGACAGAACTGGCATTGCAATTGTGTTGGGCCATTGGAGAACATGGCGGGGGTGGCAGATCTCACAAAGATGCAGCTCGTGAACTTTTTGAGAGCTTAGAGTTGCTTTTGTACGAAAATCTTTTATCTAGGTATGCTTTATCGAAACTACCTTTACATTCTTGTTTGAGACGGGACTCGGGTGATAATTCCAGTGGTGAAAGCTTCAGAAAGTCATCGCAGTCAAGGCTTCTATGTTTTGTAATCACCGCCATTGCAAAACTTGCTACATACCACCGTGAATTACTTCCGAGAGCGCGAGTCTCATTGGGAAAGGTAGCTCGATCTCGAACCTCAGATTCAAGGGTCTGGACTCGGGCTCACGATTATTTAGGACTATTGAGTGACCCTGGAGTTTCTTTGTCCATTTTGGGGCCTTCGAAACCTGCCAGCGAAGATGCACACAACCCAGGCACTGTCGACTGGAGTCAAGGCGAAACTAAGATGGTTGCACACATTCCATTTTACATTCTCCGCGAACAAGAAGGTCTTGGATCTATAACCTCCTCTCATCCTCTCTCTCTAGCCTATGATTGCAGGAGTCACCTTCTTCTCCTTGTGTTTTCTTATGTCCTCCTTTCCATGATTTCTCATTTTCAGATATTCTTCCAAGGAGATGATGAACCCTGA 2214 42.86 MVDRDRDWDFHLRTLSNSARDSNVANDPASDPNILQSVKRLYELCKAENSEDLVARVYPQFNKIFQRSVSSLSQSGTSNGLLLLVFFLAILQFFIDFGEVVLHDADPSLKTFFRSCLSRGICTAELNLAGKASSIYYLRTEVPETNKEKQEVMHTNAMEPGRSLGQAQAQAYRQLTTQATKSVTGILLCIALSDYFSLVNPIVAEAVLEFLNENQNKFVTYPIVAEIVLEFLNANRNKFLTSFPTLLPQFFPLLLKLIAWNGEKLEKPFLKIFPALISPGSFLPLFPSLMDFPILVVALERVERCSGSLVGNSIASIQKSKAPEMLLALMDEAYTGSTIGDGGGDSESEDSSTIDVADPLFLELLKDENDGLSVRERHWNSPGMTAVIQTALNTAQSDRLKQLLNMTPRILDVYFSVALREVNNSLICALIPLLMSRNSILFPDKDFSYKVCVEYELCYVLPVGSFDTYWYYTVTSVRKRLLEFMLAAFQRSPTFIALLKKPITDRLGEAYENPAKTELALQLCWAIGEHGGGGRSHKDAARELFESLELLLYENLLSRYALSKLPLHSCLRRDSGDNSSGESFRKSSQSRLLCFVITAIAKLATYHRELLPRARVSLGKVARSRTSDSRVWTRAHDYLGLLSDPGVSLSILGPSKPASEDAHNPGTVDWSQGETKMVAHIPFYILREQEGLGSITSSHPLSLAYDCRSHLLLLVFSYVLLSMISHFQIFFQGDDEP 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19011781 19024515 + Lsi04G012260.1 Lsi04g01226 661275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01226 737 PANTHER AP-5 COMPLEX SUBUNIT ZETA-1 1 125 - -
Lsi04g01226 737 PANTHER AP-5 COMPLEX SUBUNIT ZETA-1 178 454 - -
Lsi04g01226 737 PANTHER AP-5 COMPLEX SUBUNIT ZETA-1 476 693 - -
Lsi04g01226 737 Pfam AP-5 complex subunit, vesicle trafficking 30 120 IPR028222 GO:0044599
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01226 K19025 AP5Z1, SPG48; AP-5 complex subunit zeta-1 - csv:101219811 736.102
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g466 . . . . . . Bma10g00540 . . . Cma01g01143 Cma09g00937 . Car09g00850 Sed07g2663 Cpe06g00754 Cpe02g00756 Bhi09g01925 Tan01g4524 Cmetu04g1033 . Hepe01g1297 Mch11g1167 . . . . . . . . Cone6ag0080 Cone9ag0095 . . Lsi04g01226 . . . Blo07g00916 . Bda05g00729 . . Bpe03g00799 . . . Cmo01g01196 Cmo09g00934 . . . Car16g00555 . . . . . . . . . Cla05g01514 Cam05g1628 Cec05g1632 Cco05g1661 Clacu05g1613 Cmu05g1513 . . . . Cme04g00845
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007368 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01226 Lsi_Chr04 FPKM 13.506411 15.937832 19.419424 17.570299 26.57518 32.059357 30.627386 12.531668 12.277411 14.780273