Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01227 ATGGCAAGTAACAACCTAGAAAGCAATAATGAAGATGTTGGTTCTCCTCACACTCCCTACTCTCCTCAATGTTCCTCCAACTTTAACCTCTTGGATAATTCAGCAGCATCATCAAACTCCAATTCAAGAAGTGGTAACAATGATCATATTTATAGAGCAAGTGACCTTCTCGTGGCGGTCTCGGTTGGCACTGAGGCTAACCAGTCGAGAATCGTCGAGCTTGCCGATGCGGCCATGGACGAGCTCACAAAAGCAGCCCTTGATGGAGATCCTCTATGGAAGCCACAAGAAGATGAAGATCAAGCTGAATCTTACTATACATTGATGGATATAATGAAAATGGTTGAGGTTGGTGAGACTCATTGTAGTGATCTTTTAGATCTTGAAATTGGCAACACCAAATCAGGCAGTGATAATAATCAAAACAAGACAAATTTTGGTCCTAAAGACAAACAACAAGAACAACAGCATCTTCAAACTGATTTTTCAAGACAAATTGCATATGTCAGAATGGAGCCACTCAGAATTGTTGGATTTTTTATGGATTTGGAACAATGGACTCTTGTCTTCTCTGACATTGTTTCAAGAGCAGCAATTCTTCAAACTTGGACATCAATGGGACCTGTTGGAGGGAACTACCATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAAATCCCCACACCACTTGTTGAGACAAGAGAAAGTTACTTTGGGAGGTTTTGCAAACAATTAGCTCCATATACATGGGGAATTGTTGATGTTTCCTTGGAAGATCTCTTCCTTTATCCATCCGTTGGGTATAGAAGAAAACCTTCTGGCTGTTTAATCCAAGCATCTCCAAATGGTCTCTCCAAGGTGATATGGGTAGAAAATGTGGAAGTTGACCAACGACTAATGGTTCATAAAATGTATGAAGCATACATCAATTCAGGATTGGCATTTGTATTACTATTACAAGCTGGAAGGTCAAGTGTGTTGAAGTTGGCTGAGAGAATGACTAAGAGTTTCTATAGAAATGTGAGTGCTTCTAAAGTAAATCCATGGATAAAAATTCCCTTTCCTGGACCTCAAGAAATTAGGGTTATGGTGACCCCAAAACCCGATGATGATCCCGGAAAACCTCCATGTACTTCGGTGGTTTTTGCGACTTCCGTTCACGTTCCGACCTCCCCGAAACATCTTTTCCATTACCTTCGTCATGAGAAGTCTCGTAACAAGTGGGACATCCTTTCATATGGTCATGTCATTACAGAACTTTCTTGCATCATCAATGGCATCGATTCAAGAAACCGAGTGTCGATAATTCAAGTGAATTCAGAACCAAGACGAATCGAGATCTTTTACCTGCAAGAGAGTTTCTACGACGCATCGGGATCCTACATAGTATTTGCACCTGTTGATATCTACGCAATGGCCGTGGTCTTACGTGGAGGAAACCCAGATCATGTGGCTATCTTGCCTTCTGGCTTTGCAGTCCTTCCAGATAGACCAAGAATGAATGGAGAGGAAGATGTAGCTGATGGAAGCATTCTAACAGTTGCTCTCAACATCATTGATCATGCAGTAACTGAAAGAGTGCCTTTTCAATCAATGGTTTCCATGCATAGGATTATGACTGAAACTGTTGCCTCAATCAAAGAGCCTTTCAAAATTCAACAGTTTTGA 1668 41.25 MASNNLESNNEDVGSPHTPYSPQCSSNFNLLDNSAASSNSNSRSGNNDHIYRASDLLVAVSVGTEANQSRIVELADAAMDELTKAALDGDPLWKPQEDEDQAESYYTLMDIMKMVEVGETHCSDLLDLEIGNTKSGSDNNQNKTNFGPKDKQQEQQHLQTDFSRQIAYVRMEPLRIVGFFMDLEQWTLVFSDIVSRAAILQTWTSMGPVGGNYHGTLQVMTAEFQIPTPLVETRESYFGRFCKQLAPYTWGIVDVSLEDLFLYPSVGYRRKPSGCLIQASPNGLSKVIWVENVEVDQRLMVHKMYEAYINSGLAFVLLLQAGRSSVLKLAERMTKSFYRNVSASKVNPWIKIPFPGPQEIRVMVTPKPDDDPGKPPCTSVVFATSVHVPTSPKHLFHYLRHEKSRNKWDILSYGHVITELSCIINGIDSRNRVSIIQVNSEPRRIEIFYLQESFYDASGSYIVFAPVDIYAMAVVLRGGNPDHVAILPSGFAVLPDRPRMNGEEDVADGSILTVALNIIDHAVTERVPFQSMVSMHRIMTETVASIKEPFKIQQF 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19023880 19056634 - Lsi04G012270.1 Lsi04g01227 661276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01227 555 ProSiteProfiles START domain profile. 64 315 IPR002913 GO:0008289
Lsi04g01227 555 PANTHER PROTEIN FWA, PUTATIVE-RELATED 14 315 - -
Lsi04g01227 555 PANTHER PROTEIN FWA, PUTATIVE-RELATED 318 551 - -
Lsi04g01227 555 Pfam START domain 155 316 IPR002913 GO:0008289
Lsi04g01227 555 MobiDBLite consensus disorder prediction 1 26 - -
Lsi04g01227 555 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 315 IPR042160 -
Lsi04g01227 555 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 318 551 IPR042160 -
Lsi04g01227 555 SUPERFAMILY Bet v1-like 68 310 - -
Lsi04g01227 555 MobiDBLite consensus disorder prediction 131 157 - -
Lsi04g01227 555 SUPERFAMILY Bet v1-like 321 497 - -
Lsi04g01227 555 SMART START_1 127 328 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01227 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101212560 878.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01227 Lsi-Chr4:19023880 Lsi01g00412 Lsi-Chr1:3515519 3.38E-104 dispersed
Lsi02g00624 Lsi-Chr2:5553402 Lsi04g01227 Lsi-Chr4:19023880 8.46E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01227 Lsi_Chr04 FPKM 89.132912 91.003242 89.193665 77.930634 156.503677 180.471802 156.443924 80.630013 87.061089 72.709106