Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01228 ATGACAAGAAAAAACCTTCCCAAACTGCCTATTTCCCACGCCAATATTCCCAAAGAAAAGGGGCCACAGACGCAATTTTTGAACTTTTACATTATTATTTATACTTCTTTTCTTCCCCTTCCCAAACCCCATTTTTCCTATCTCTTTTCTCATTCCTTCATACTTCATATGGCCAAACAAAACTCCACCAATAATTCCCTTTACAACGGCGGCGACGATCTATCGCCGGAGGAGAGTGGCTGGACCATTTACTTTGAAGATTTTCTTAACACCAATAACCCTTCTCATCAACCACCTACCTCCTTCTCTTCTTCTCATTTCTCTCTCGATCAAAGCTACTCTGTCGCCGACGCTGCCTCCTCCGTCCCCGATCACAAACTACCCCTTGACAACGACGAAGCTGCCGTAGATCCCGGGTTCGGCTACAAGGATCATATTAATTTTTTCAAGAAGAGGAAGATGATCAAAGAGTTGTTTGTGAAAGATGAAGCTTTGGAGGATACTGCTAGCTCTCCTGTTAATAGTCCCAAGGTCTCTGATTCAACCTACTTCAGTAGGAACCAGAAGAATAAAGAGAATTTAATAACTCCTGAGGTAGATGAGAGAAGAGAAATGGGTAATTTTGTTGGAATTGGCAATGACTACACAGAATTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTGTCTATGGTAGTTAATTATTTGGCTGAATAA 714 41.46 MTRKNLPKLPISHANIPKEKGPQTQFLNFYIIIYTSFLPLPKPHFSYLFSHSFILHMAKQNSTNNSLYNGGDDLSPEESGWTIYFEDFLNTNNPSHQPPTSFSSSHFSLDQSYSVADAASSVPDHKLPLDNDEAAVDPGFGYKDHINFFKKRKMIKELFVKDEALEDTASSPVNSPKVSDSTYFSRNQKNKENLITPEVDERREMGNFVGIGNDYTELKKRGLCLVPLSMVVNYLAE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19094982 19097781 + Lsi04G012280.1 Lsi04g01228 661277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01228 237 PANTHER VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED 61 235 - -
Lsi04g01228 237 PANTHER VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED 61 235 IPR039280 GO:0010089
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01228 - - - csv:105435101 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00144 Lsi-Chr10:2321330 Lsi04g01228 Lsi-Chr4:19094982 7.84E-16 transposed
Lsi11g01464 Lsi-Chr11:23213987 Lsi04g01228 Lsi-Chr4:19094982 9.66E-07 transposed
Lsi04g01228 Lsi-Chr4:19094982 Lsi05g00618 Lsi-Chr5:7616886 1.73E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g463 Blo03g00577 . . . . . . . . . Cma01g01145 . . . Sed07g2662 . Cpe02g00754 Bhi09g01929 Tan01g4521 Cmetu04g2433 . Hepe01g1299 Mch11g1165 . . . . . . . . Cone6ag0082 Cone9ag0096 . . Lsi04g01228 . . . . . . . . . . . . Cmo01g01198 . . . . Car16g00557 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004838 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01228 Lsi_Chr04 FPKM 29.008486 31.103033 28.010815 27.565142 28.997545 34.692333 29.683901 32.522308 29.547091 31.719877