Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01231 ATGTTTAAAAATATGGTTTTGAACACGTTGAAATATGATCTCCCGTATGTGGGTGGTTCCCTTGAGTGCAGGAAAATACCAAGAGATTTAACGGAGGCAACGTTATCTGGTGCAGGATTATCCATAGTAGCAGCTCTGTCCATGATGTTTTTATTTGGAATGGAATTGAGTAATTATTTGAGTGTTAGCACGTCTACATCTGTAATTGTTGACAACAGTACTGATGGTGACTTCTTACGGATGGACTTTAATATTAGTTTCCCTGCACTCTCATGCGAATTTGCTGCTGTAGATGTGCACGATGTGTTAGGAACGAATAGGTTGAATATTACGAAAACAATCCGGAAATTTTCTATAGATTCAAATTTGCGGTCCACTGGATCTGAGTTTCAGTCAGGACCACTATCAAATGTGATTAAGCATGGGGATGAAGTAGATGAAGAAACCAATGAAGGTTCTGCTGTGTTGAATGCTCGGAACTTTGATAGATATGCTAATCAGCATCCTATTTTGGTGGTTAATTTTTATGCTCCTTGGTGCTACTGGAGTAATAGGCTGAAACCTTCATGGGAGAAGGCTGCCAAAACTATAAGAGAAAGATATGATCCAGAATTAGATGGACGAATTCTTATGGCAAAGGTTGATTGCACGGAAGAAGGTGATTTGTGTCGGAAGGATGATCATGGACACCATGACCATGAATCTTACTATGGAGATCGAGATACAGACTCACTGGTTAAGACAATGGAAGATTTGATTGCACCTCTTCCAGCGGGATCACAAAAGCTAGCTTTGGAGAACAAATCCAACAATGCAACAGGAAATGTTAAGAGGCCTGCTCCATCAGCGGGAGGCTGCCGGATTGAAGGATATGTTCGTGTAAAGAAGGTTCCAGGAAGCCTTGTAATTGCAGCTCGTTCAGAATCTCATTCATTTGATGCATCTCAAATGAATATGTCACACATCATATCTCACCTTTCATTTGGTAGAAAGATTTCACCCAAGGCATTTAACGATGCTAAACAATTAATTCCATACATCGGTATAAGCCATGACAGGTTGAATGGACGGTCATTCATTAATCAGCGCGACTTGGGTGCAAATGTTACCGGTCAGGCGGGTTCTCCTGTGAGATTAGTCGAGGTGCGCATAGAGCATTATCTTCAAATAGTTAAAACAGAGGTGCTGACAAGGAGATCTGGTAAATTACTTGAAGAGTATGAATACACAGCTCACAGCAGCGTGTCCCAGAGTCTACACATACCCGTTACAAAATTCCATTTTGAGCTCTCTCCCATGCAGGTTGTTATTACAGAAAACCAAAAGTCCTTTTCACATTTTATTACAAATGTGTGTGCCATAATTGGAGGTGTTTTTACGGTGGCTGGAATATTGGATGCACTTCTGCACAATACCATTAGACTCGTGAAGAAAACAAAGCAAAGAAGCGGTGTTCTGTTGAAAATTTTTGATTTTGTAGGATTTGAATTCCAGAATAAATTCAATTATATGCATCCACATTTTCTAATAAATCTGAACAGATATGAAACTCCAATCCACCTTGAATTCAAAACAGATTCAGAGCCACCAAATATGTCTTTTGAGAAGAAAGCTAAGATAATAGCAGCAACAAACGCTCCAATGGAGCCAATGCTGCCCGGGATGATCGAAAATCCAACACTCGCTGGTGGCCCTGATACAGGAGGTGCAGGGTTAATCTCAACCGTCCCTGCAGACGGTGATGGGGACTCTTCGCCAGTAGGCGGGGTAGATGGATTGACTTCCTCAGGTGGTGGAGACGGGTTGATTTCAGTTGACCCTGATGGAGGCGGAGAAGGAGAAGGTGTTATTTCAGTTGAATTTGAGAGAGATGGAGATGGAGATGGAGCAGAGATTGGAGGAGAAGTGGTGGTTTGA 1917 41.68 MFKNMVLNTLKYDLPYVGGSLECRKIPRDLTEATLSGAGLSIVAALSMMFLFGMELSNYLSVSTSTSVIVDNSTDGDFLRMDFNISFPALSCEFAAVDVHDVLGTNRLNITKTIRKFSIDSNLRSTGSEFQSGPLSNVIKHGDEVDEETNEGSAVLNARNFDRYANQHPILVVNFYAPWCYWSNRLKPSWEKAAKTIRERYDPELDGRILMAKVDCTEEGDLCRKDDHGHHDHESYYGDRDTDSLVKTMEDLIAPLPAGSQKLALENKSNNATGNVKRPAPSAGGCRIEGYVRVKKVPGSLVIAARSESHSFDASQMNMSHIISHLSFGRKISPKAFNDAKQLIPYIGISHDRLNGRSFINQRDLGANVTGQAGSPVRLVEVRIEHYLQIVKTEVLTRRSGKLLEEYEYTAHSSVSQSLHIPVTKFHFELSPMQVVITENQKSFSHFITNVCAIIGGVFTVAGILDALLHNTIRLVKKTKQRSGVLLKIFDFVGFEFQNKFNYMHPHFLINLNRYETPIHLEFKTDSEPPNMSFEKKAKIIAATNAPMEPMLPGMIENPTLAGGPDTGGAGLISTVPADGDGDSSPVGGVDGLTSSGGGDGLISVDPDGGGEGEGVISVEFERDGDGDGAEIGGEVVV 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19144326 19152692 + Lsi04G012310.1 Lsi04g01231 661280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01231 638 Pfam Endoplasmic reticulum vesicle transporter 282 466 IPR012936 -
Lsi04g01231 638 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 24 107 IPR039542 -
Lsi04g01231 638 Pfam Thioredoxin 154 225 IPR013766 -
Lsi04g01231 638 MobiDBLite consensus disorder prediction 561 616 - -
Lsi04g01231 638 Gene3D Glutaredoxin 144 273 - -
Lsi04g01231 638 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 24 479 IPR045888 -
Lsi04g01231 638 CDD PDI_a_family 155 249 - -
Lsi04g01231 638 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 24 479 - -
Lsi04g01231 638 SUPERFAMILY Thioredoxin-like 148 253 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01231 - - - csv:101213231 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01231 Lsi-Chr4:19144326 Lsi08g00954 Lsi-Chr8:18025375 1.36E-12 dispersed
Lsi04g01231 Lsi-Chr4:19144326 Lsi08g00442 Lsi-Chr8:12044547 2.07E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g461 . . . . Bpe09g00185 . Bma10g00538 Bma13g01037 . . . Cma09g00934 . Car09g00847 Sed07g2660 Cpe06g00751 . Bhi09g01932 Tan01g4519 Cmetu04g0238 . Hepe01g1301 Mch11g1163 . . . . . . . . . . Cone14ag1127 Cone15ag1146 Lsi04g01231 . . . Blo07g00917 Blo10g00815 Bda05g00731 Bda12g00898 . Bpe03g00800 . . . . Cmo09g00931 . . . . . . . . . . . . . Cla05g01521 Cam05g1634 Cec05g1637 Cco05g1670 Clacu05g1623 Cmu05g1521 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005210 2 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01231 Lsi_Chr04 FPKM 4.646853 5.389625 9.229346 10.211606 9.16394 10.590886 11.095252 18.037209 17.333244 17.518831