Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01234 GTCTCCGATTCCGATTACCCTGTTTTCTTCCCTTTCTTTTACACCCAATTTCTCCCTCTCTCTCTCTCTCACTTACTCTTCCGCCGCCGTCAACACCGGAATTCATCTCCAATTTGGAAGTTTCTAACGATGCGATGTTTAATTTTTCACACACCCTTTTGGTTGTTTTTTGTGTTGGTCTCCAATTTCGAGCTCTGTTTTTCACAAGATTACAACATTGGCGATTCTCTGCCTGTGGCGGCGCCGCCGCCGGAGCAAAATGAATGCAATGGGATTTTCTTAACGTACACTTTCTTTTCAAGGGAAAAGGAATTTCCCCATGTGAAGAATTTTTCTGCTCAGGCTTGGGCGTTCAGAGCTCAGGCCACCGTGCTGAACGCCGGTGCGACGGAGCTCGACGCTTGGAAGATGTATATTGGGTTTCAACATAGAGAGATTTTAGTGTCGGCGGCTGGTGCGGTGTTGGTCGATGGTACGGATTTCCCCGCCGCCGTCGGGAAAGGGGCGATCTTGGCTGGATACCCACAAACGGACTTGAAAACCTCCATAGAAACCGCCGGAGATTATAACCAAATTCAGGCGACGATTGATATCACCGGAACTCAATTCGGCGTGAAGAAGAACGGAATTCCGATGCCTAAGACGATTCGCCTTGAAAATGAAGGCTTTAAGTGTCCGCCGCCTCGTCGTCATCGCAACAAAAGCTATATGCATGTTTGCTGCAAGAAAGACCCCAAATTCAAGCAAAAGCCACCAAAGAAGACCAAGTTTTTCCCTCGACAAAACGGCGATCTCTTGCTCACCTACGACGTCCTCCAAGTTTATGGGAACAACTATCTTGCACAAGTCACCATTGACAACAACAACCCTCTCGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATTGACTACTCTGACTGCATCTTTGGCCCTCAAGGCCAATACTATCAAGATTTTGACTTCTCCCAAATCATGAATTGTGAAAAGAACCCCATCATCGTCGACCTCCCTACAGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCTTCTGTTGCAAGAACGGCACGATCTTACCACCATTGATGGATCAAAGCAAAGCAAGGTCTATTTTTCAGCTCCAAGTCTATAAGCTTCCCCCTGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAATGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGAACCAACACAATTTCCTGACTCAACTGGACTTCAATCCATAACCACAGCCATTTCTAGTTGGCAAGTTGTTTGCAACATTACAACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAGCTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATACCAGTGGTTGGACTGCTAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGACAAAGCTGGTAAAGGCTATGAGAATGTCTACTCCTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTGTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGAGGAATGGGACAGACCCGAGATTCGATCCGCGAGTACCGGGAAAGCAACAATCGGTGATCTCTTTCACTAAGAAGAATTTGAGAAACCTTAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAGTGTGCACTTCCTCCACATATTCCTTTAGGAAATGGTGCTGCTCACAGCCTCCATGTTAGCTCTGAACTTTTAATGCTGCTGCTCACAATTATGGCCTTTTTCATTCTCTTCAGT 2121 44.65 VSDSDYPVFFPFFYTQFLPLSLSHLLFRRRQHRNSSPIWKFLTMRCLIFHTPFWLFFVLVSNFELCFSQDYNIGDSLPVAAPPPEQNECNGIFLTYTFFSREKEFPHVKNFSAQAWAFRAQATVLNAGATELDAWKMYIGFQHREILVSAAGAVLVDGTDFPAAVGKGAILAGYPQTDLKTSIETAGDYNQIQATIDITGTQFGVKKNGIPMPKTIRLENEGFKCPPPRRHRNKSYMHVCCKKDPKFKQKPPKKTKFFPRQNGDLLLTYDVLQVYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDYSDCIFGPQGQYYQDFDFSQIMNCEKNPIIVDLPTDRANDSKVGKLPFCCKNGTILPPLMDQSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVEPTQFPDSTGLQSITTAISSWQVVCNITTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCNPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYTSGWTARITLFNWEEYPFEDWFAAVQLDKAGKGYENVYSFNGTKLPPDMIKNTILFQGLEGLNYLMGERNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSELLMLLLTIMAFFILFS 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19156171 19159989 - Lsi04G012340.1 Lsi04g01234 661283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01234 707 Pfam COBRA-like protein 279 458 IPR006918 GO:0010215|GO:0031225
Lsi04g01234 707 PANTHER COBRA-LIKE PROTEIN 10 53 704 - -
Lsi04g01234 707 PANTHER COBRA-LIKE PROTEIN 7 53 704 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01234 Lsi05g00621 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01234 Lsi-Chr4:19156171 Lsi05g01571 Lsi-Chr5:23465913 0 dispersed
Lsi04g01234 Lsi-Chr4:19156171 Lsi05g00621 Lsi-Chr5:7649343 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01234 - - csv:101216608 1003.43