Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01235 ATGGAGGAATTTCTGGTGGCAGTTCTCTCGATGCTGCTTGTTGTTGCATTGGTTCCTCTGTTTCTCTGGCGACGCTATCAGGACTCCCGCTCCGGTCATGCACATGAAGATGAGTGTCAGGTTCCTCAGAGAGAAACGGTGGTTCGTGCCACTGGTGGTGGCCGTCGTATGCGTCGGAGACCTGCTACAGCTGCTAGTTCGTCGAGTGCAGGGGCATCTCTGGAAGATAGTGCTGATGGAAGTGATGATGAAATTGCTGCGGAAGAATACCATGAAGGAAGAGTGTTGAAGAAGAAAGAAAAGAAGCGACAAGAGCGAGAGGCACAAAGACAGGCTGAACAAGCTTCCCGTGATTCAAGGTTTACAAAACAAGACCATTATGCAGAAATGCGGAGGAAAAAAGATGAAGAGCGTGAAGAGCAGGAACGATTACTGGAAGAAGAAGCCAAGGCACGGAAGGCCAAGGAGGAAGAGGCTGCTGCACTTGAGTTTGAGAAGTGGAAAGGGGAATTTTCAGTTGATGCTGAAGGTACAACTGAAGCTGAAGTGGAAGGCGGAAATCAAGATTTGCTCTCTGCTTTTGTGGAATATATAAAGAGTCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAATTAAGAACTCAGGAATGTATTAATCGGATCACTTCCCTGGAGAGTATGGGTCGACTTTCTGGTGTTATGGACGATAGAGGAAAATACATATACATATCAAAGGAAGAAATGCAAGCAGTTGCTGATTTCATCAAGCGTCAGGGAAGGGTAAGCATTTCACATCTAGCTAGTAAGTCCAACCAGTTCATTGATTTGGAACCAAAAGCCCAATTGGTTGAGGAAATCAATGTTGAGGAGATAGCTGTCTCTTAA 894 45.41 MEEFLVAVLSMLLVVALVPLFLWRRYQDSRSGHAHEDECQVPQRETVVRATGGGRRMRRRPATAASSSSAGASLEDSADGSDDEIAAEEYHEGRVLKKKEKKRQEREAQRQAEQASRDSRFTKQDHYAEMRRKKDEEREEQERLLEEEAKARKAKEEEAAALEFEKWKGEFSVDAEGTTEAEVEGGNQDLLSAFVEYIKSHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISKEEMQAVADFIKRQGRVSISHLASKSNQFIDLEPKAQLVEEINVEEIAVS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19169194 19172887 - Lsi04G012350.1 Lsi04g01235 661284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01235 297 SMART DDRGK_2 93 278 IPR019153 -
Lsi04g01235 297 Gene3D - 189 246 IPR036388 -
Lsi04g01235 297 Coils Coil 127 165 - -
Lsi04g01235 297 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 97 293 - -
Lsi04g01235 297 MobiDBLite consensus disorder prediction 87 151 - -
Lsi04g01235 297 MobiDBLite consensus disorder prediction 32 151 - -
Lsi04g01235 297 Pfam DDRGK domain 96 277 IPR019153 -
Lsi04g01235 297 SUPERFAMILY Winged helix DNA-binding domain 185 254 IPR036390 -
Lsi04g01235 297 Coils Coil 94 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01235 K23344 DDRGK1; DDRGK domain-containing protein 1 - csv:101212750 393.275
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g457 Blo03g00579 . . . . . . . . . Cma01g01147 Cma09g00932 . Car09g00846 Sed04g3188 Cpe06g00750 Cpe02g00753 Bhi09g01935 Tan01g4516 Cmetu04g2882 . . Mch11g1161 . . . . . . . . . . Cone14ag1125 . Lsi04g01235 . . . . . . . Bpe11g00528 . . . . . Cmo09g00929 . . . Car16g00559 . . . . . . . . . Cla05g01528 Cam05g1637 Cec05g1641 Cco05g1674 Clacu05g1629 Cmu05g1525 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007655 1 2 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01235 Lsi_Chr04 FPKM 17.587996 17.200436 20.878269 21.189766 19.810513 16.585464 19.660288 21.148355 21.452036 20.449152