Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01240 ATGCGTTCCAAATCCAAACAACTAAGCTCACTATTCCGCTTCGCCATTATAGCTTCGAAACCTTCAAAGAATCCCCGAGATGCAGATCTTCAAAATGATGTTTCCACGATCGATCACTTCTCTCCAAGCACTTTTCTCTCTAACGCCATCCATAAACGTTCCATCAAGTCCCCGAACTCCAAGAAGCTTCCCCAGAAGCCCAATTCTGACGTTAAACTTCCTTCTCTCATTATAGAAGAGCCTTCAGAGTCTGGGGAATATATGAAGCATCTAACCAATGCCATATCTTCCATTCTGTGCGGCTCATTTGTCAGGTCTCCTGATGCACAAGGAAATGGCAATGAGAAATCTTTGGAAAAATTATTAGATATACCATGGTTTTCCATCAAATCAAATCATAGCATGGCAGTACATCGTAGAGAAATATCCCGGGAAAGAAAGCAAAAATGGATATTCAAAAATAGCCAAAACAAGAGATTTAGTCGATTAGTTAAAATTTGTGCACAAAAGCTGGGGACTGATCTTACTCTAGAAGTCTTTGGTAAATTGGGACGAGAAACTGGTGTGAAAGAATACAATGCACTAATAGATATGTGTTTAGAGGAGGCTAAGGCAAGTAAAGACGTGGAGGTTGTATTGGAACAGGTTGGGAAGGTTTATCAGCTATTTAAAGTAATGAAAGAACAGGGTTTTCAATTAGAAGATGAAACTTACGGTCCAGTACTTACATATTTTATTGACATGGACATGGTGGAGGAATTTAATTTTTTCTGTGAGGCTGTAAAAGATGGAAATCCAGGCTCAAAGTCAAGGTTGGGTTACTATGAGATGTTGTTCTATGTTAAAATCAACGATGAAGAAAAAGTTCAGGAGCTTTGTTACCATGCTACAGTTGATGATGGAGTGGACAAGTACAGTTTACAAGAAAATTATTTGTTGGCACTCTGTGAATGTGAGAAGACGGAGGAACTTTTGCAGATGCTGGAAGTTATAGACATCACAAAACTTTCATCAACTGTAGTTGCAGAAAACATCTTCAAATGCTTAGGGAGGGTATCACTTCACTCTTTTGCAAAAAAGTTGCTTTTGGCGTTTAAAACTTCTGGGAATGGAGCAGAGAATATCCCATATCTTATATATAATTATGCTGTCAGCATTCCAAATTTAGCGATTGAGGATATGGTTTCAAAGTTCAAGAGCATGCACTTCGAGTTAGATATTAATCCTTCATCTGCTTCATATGAGAAGCTCATCTGTTATTGTTGTGGTTCACTTAAGGTTCACATGGCCCTTGATATAGCAAATGAAATATGTGATGCAGATTTCACACTATCAACAGATGTCTTGCACTCCATTTTACATGCTTTGGATGAAGGCTGTGAATATAATTTGTTTAAAGCTGCGTATGACATGCTCAAGGTATCGGAGGAAATGAACATTATTCCTACAGCTAACATGTACAATGCTATCATGGCAGGATACTTCCGAGAGAGGGTTTTAGGGGCTGGGGTTGGTGGACTCCTGCTTTGGCTCTCTCAATGTCTTCCCAAGGTCCCTGTTTTGTCTTCAACTTCTAAGCAAGTCAATCAGAAGGTTGAAGATGAGAAGCAGAAAACCTTCGTGGATGTTGTAGTTGGATCAAGGGAGTCAGAGCTTCATGGATCAGTTTCCAAAATGGAGTATGAACCAGAGATGAATATGGAAGTGACGTTGCCATTGATGGTGTTGCAGCGTCATGGGCTGGAGATTGGCCTTCTCTGGAGGATGGATCACGGACTTGTACATCCCCTTTCCTTAGAGAACCAAAGGTATTGTCTCTTCGGTGGTTGGGGCAGAGGGCTTGTTGAGTTTGAAAAAGATGATGGAGAGGTGTTGTGGATGAAGTCTTCTTTATTGGACAGAAATCCATTTTCCGGCACTTGGATAGTTGGAGACGTGAAGAACACTTCTGATGGATTGATGGTTCTCAAGCAAATGGAACTTGCGGGTGTAAAACCAGATTCCATGACTTTCAGCTATTTGATCAACAATTGTGAATGTGAGGAGGATATTATCAAGTCACCTTTCTTCCCGCAGTATTATGAAGAACTGAAGAGTTCTGGAGTTCAAGTGACAAAGCAGATTTTCATGGCGCTTATAAATGCGTATGCTGCGCATGGACAATTTGAGAAGGCAAAACAGGTTATATCGGATGAAGGAATACCAGTCAAGAACTTGAATGAAGTTAGAAGTGTGCTAGTCTCTGCTCTTGCTTCACATGGGCAAACGGCTGATGCCCTGAAAATTTATGATGAAATGAAACAAGCTGGATGTGATTTGGAGCCCAAAGCTGTTATCAGTCTTGTTGAGCACTATCCATTCGATGGGCCATTGAATAGAATGCTTCAGTTACTTGGTGATTTGCATCATGATCTTGATGACTGGATAGATTGTTGTCACAGAATTATCTTGTTTTCTATAAAACACAACGATCTGAGTTCAACTGTTGATCTATTGAAGCAGCTCAGTTACAGATGCAGTAATGATGAAGTGACGATGGGAGTGGCTTTTGATGAGATTTTTTCACTCATTGCAGAGTCTGAGCCTACATATTTAGAAACAGGCCTACAATTGCTTCAATTTATAAAGAACGATCTTGGTCTTTCTCCTCCACGAAGATGCCTCGACTTTCTCCTTGGCGCTTGTGCTAATGCTAAAGATGCAGAAAGCTCTCGTCTTATCTGGAAAGAATATGAAAATGCTGGCCTCCCTTACAACACCATTAGTTACTTGAGGATGTATCAAGCTCTTTTAGCATCTGGGGCTCTAGAATCTGCAAAAGTTTTGCTTGATAAAATTCCAAAAGACGATGCTCATGTTTGCTGGATAATCAAGGAATGTGAAATGGTTTATATTGCCTCTCCTACAGCAAAGAAGAAAAGAAGAAAAAAGATGCTGAAAATGATCAGAAATAAATTGATTACCTCAACAATCAAAGTATAA 2982 39.87 MRSKSKQLSSLFRFAIIASKPSKNPRDADLQNDVSTIDHFSPSTFLSNAIHKRSIKSPNSKKLPQKPNSDVKLPSLIIEEPSESGEYMKHLTNAISSILCGSFVRSPDAQGNGNEKSLEKLLDIPWFSIKSNHSMAVHRREISRERKQKWIFKNSQNKRFSRLVKICAQKLGTDLTLEVFGKLGRETGVKEYNALIDMCLEEAKASKDVEVVLEQVGKVYQLFKVMKEQGFQLEDETYGPVLTYFIDMDMVEEFNFFCEAVKDGNPGSKSRLGYYEMLFYVKINDEEKVQELCYHATVDDGVDKYSLQENYLLALCECEKTEELLQMLEVIDITKLSSTVVAENIFKCLGRVSLHSFAKKLLLAFKTSGNGAENIPYLIYNYAVSIPNLAIEDMVSKFKSMHFELDINPSSASYEKLICYCCGSLKVHMALDIANEICDADFTLSTDVLHSILHALDEGCEYNLFKAAYDMLKVSEEMNIIPTANMYNAIMAGYFRERVLGAGVGGLLLWLSQCLPKVPVLSSTSKQVNQKVEDEKQKTFVDVVVGSRESELHGSVSKMEYEPEMNMEVTLPLMVLQRHGLEIGLLWRMDHGLVHPLSLENQRYCLFGGWGRGLVEFEKDDGEVLWMKSSLLDRNPFSGTWIVGDVKNTSDGLMVLKQMELAGVKPDSMTFSYLINNCECEEDIIKSPFFPQYYEELKSSGVQVTKQIFMALINAYAAHGQFEKAKQVISDEGIPVKNLNEVRSVLVSALASHGQTADALKIYDEMKQAGCDLEPKAVISLVEHYPFDGPLNRMLQLLGDLHHDLDDWIDCCHRIILFSIKHNDLSSTVDLLKQLSYRCSNDEVTMGVAFDEIFSLIAESEPTYLETGLQLLQFIKNDLGLSPPRRCLDFLLGACANAKDAESSRLIWKEYENAGLPYNTISYLRMYQALLASGALESAKVLLDKIPKDDAHVCWIIKECEMVYIASPTAKKKRRKKMLKMIRNKLITSTIKV 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19289314 19319979 + Lsi04G012400.1 Lsi04g01240 661289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01240 993 Gene3D Tetratricopeptide repeat domain 814 988 IPR011990 GO:0005515
Lsi04g01240 993 Gene3D Tetratricopeptide repeat domain 310 539 IPR011990 GO:0005515
Lsi04g01240 993 Gene3D Tetratricopeptide repeat domain 643 813 IPR011990 GO:0005515
Lsi04g01240 993 PANTHER OS02G0132600 PROTEIN 465 500 - -
Lsi04g01240 993 PANTHER OS02G0132600 PROTEIN 1 464 - -
Lsi04g01240 993 PANTHER OS02G0132600 PROTEIN 647 976 - -
Lsi04g01240 993 TIGRFAM PPR: pentatricopeptide repeat domain 745 771 IPR002885 -
Lsi04g01240 993 Pfam PPR repeat 709 729 IPR002885 -
Lsi04g01240 993 Pfam PPR repeat 744 771 IPR002885 -
Lsi04g01240 993 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Lsi04g01240 993 Gene3D Tetratricopeptide repeat domain 129 270 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01240 - - - cmos:111445890 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01240 Lsi-Chr4:19289314 Lsi08g00781 Lsi-Chr8:16198420 1.89E-09 dispersed
Lsi04g01240 Lsi-Chr4:19289314 Lsi08g00796 Lsi-Chr8:16349284 3.37E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01240 Lsi_Chr04 FPKM 27.9 31.160494 0.0 0.0 7.767436 6.390252 5.754536 0.0 0.0 0.0