Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01243 ATGATTAAAGTGGATGTTGGAGAATTGGTGATTCTTGTATTTTGGGTATTGGGTATTTTGCTTACTTTGATTCTGGGGATGAGGAATGATGGAGCTCTGAAACAACAGGGAACCGTAGCGCGCTCTGGGCGGGCTCATGAGTTCTTATCAAGTTCCTTTCGGGCTTTTTCTAGTTACATGAAGATTGTTTCTGCTGGTGCATCCACTGTTGCACGGTCGGCTGCATCAATGGCATCTTCTTTGGTGGATAAGGATGATGAAGCAAATGGATTCCAGGTGAATTGGGCTGGCTTTGACAAGTTAGAGTGGGACAACAATGTCATTCGACAGGTTCTTCTGTTGGGTTTTCGTTCTGGTTTCCAGGTTTGGGATGTTGAGGAAGCAAATAGTGTCCAAGACCTTGTTTCTCGGTATGATGGTTCTGTTTCATACATGCAAGTGTTACCCAGACCAATATCATCAATGAGATCAGGAGATAAGTTTGCAGAAAGTAGGCCATTGCTGGTACTTTCTGCTTATGGTTCCATTGCAGCTGCTTTTAACATTCAGGATCGATTAGCCTCTTCTGGCAATGCAGCCATCCCAAAGGGCCAGGAACTAGTAGATGGGAATTTTATGCCCACATTTGTTAGGTTTTATTCCTTGAAATCTCAGACTTATGTGCATGAGCTAAAATTTAGATCAGCTGTTTATTCTGTGAGATGCAGCCCCCTGGTTGTTGCCATTTCTCTGGCAACTCAGATATACTGCATCAATGCTACAACTTTGGAGAAGGAACATATCATTCTTACAAATCCTGTTGTTTCTGGTTTTCCTGGATCTGGAGGAGGTATAGGTTATGGACCCCTTGCAGTGGGACCCAGATGGCTGGCTTATAGTGGATGTCCGACCATGGTGTCAAATACAGGACGAGTGATTCCGCAGCATTTAAAACCTTCTGCTAGTTTTTCTCATTCTTCTTCAAATGGAAGTTTAGTTGCTCACTATGCAAAGGAGTCGAGTAAGCAACTTGCAGCAGGCATTGTTACCCTTGGCGACAAGGGTATTAAGAAGCTATCGAGGTATTACTCTGAGCTCTTACCCGAAAGCAACAATTTTCTTCAATCAGGTGCTCAGGGTTTGAAGGGGATTGGAACTCTTAATGGCCATGCTGCAGATGCCGATAGTGTTGGAATGGTTATTGTGAAAGACATTATCAGCAAAGTGGTCATCACCCAGTTTAAGGCACATAAGAGCCCAATTTCTGCTTTATGCTTTGATCCAAGTGGCACCATCTTGGTGACTGCTTCTGTTCAGGGTCATAGCATAAATGTTTTCAAAATTATGCCAAGTTCCAGTTCGAACTCATCTGTATCTGGTACTGCTGCATCTTATAGCCATTTGTACAGACTCCAAAGAGGCTTCACTAATGCAGTCATACAAGATATCAGTTTCAGCTACGATAGCAACTGGATCATGATTAGTTCCTCTAGAGGGACAAGCCATCTCTTTGCTATAAACCCTGCTGGGGGACAGGTGAATTTTCCAACTGCTGACATCAGTTTTATTACTAGAAATGGTGGGCCGGTGGTTCCTGCAAGACAAACTGTTCGACGAGTTGATTCTGGTTTGCACATGCCTAGTAAACAGAACCAATGTGCTACGGGTAGTCCACTTACACTCTCTGCTGTTACTAGAATACATCATGGAAGTAATGGCTGGAGAGGCACTGTTAGTAGTGCTGCAGCTTCTGCAACCGGTAGAATGGGTATTGTTTCGGGAGCCATTGCTTCAGCTTTCCACGAGTGCAAGGGAAATGCTGTGCATGTGGACAATGGGTCTTCTGAGGTTAGGTACCACATAATAGTTTTTTCTCCATCTGGCAGTATGATACAGTATGCATTGCGAGTGGGTTTAGATTCAACCATAGTTTTGCCGAGATCTAGCATGGCTCTTGAATTAGTCCCCGAATTGGATGCAAGACTAGTAGTTGAAGCTATTCAGAAATGGAATATATCTCAGAAACAAAACCGTAGGGCTCATGATAATAGCGTTGACATTTATGGTGACAATGGAGGTTTCGATTGCAATAAAAATTATTGTGAAGAAATGAATGGGAATCCTGTTGTTGAAGCTAGTGGCAATGTCTTTAAGGCAAAGACTTGCAGGGAGGAACAATACCACCTGTATATTTCAGAAGCAGAACTGCAGATGCATGCTGCTCGTTCTCCGCTGTGGACAAAACCTGAGATATATTTTCAAGTGATGGCAAGAGATGGAGTCAAAGTTGATGAAATCGATCATCCTGGAGAACTTGAAATCGAAAGGATGCCCACTCGTACGATTGAAGCTAGGTCAAAAGACCTTGTTCCAGTTTTTGACTATCTTCAGTCATCCAAAAGTTCGCATCCAAGGTATTTAAGTAGCAACAGTGACCAGCTGTTGCTGCACCAGAAATCTGGCCAATTTGAAAATGGAAGGCTATCATGGTCATGGAGAAGCGATGTGAGTCCCCACGACTCTGTTGTCAGCAACGGACCTGAAGTAACTGGTAGGCGTGGTTACAAGATGGTAACAGAAACCAAGGGCATTGTAGATGAGTATGAATGCCCAAGGTCACAGCCCCAGCTCAGTAATGTAAATAATTGTACAGAGAGCATAAGCATGGAGTCTCAACCCAAATCTGTAAATAATCATCATAAAAGTGTCCTCAGGGTGGAGAATCATTTTGAAGACCTAGGTGATGAGTTTGAGTAG 2736 43.35 MIKVDVGELVILVFWVLGILLTLILGMRNDGALKQQGTVARSGRAHEFLSSSFRAFSSYMKIVSAGASTVARSAASMASSLVDKDDEANGFQVNWAGFDKLEWDNNVIRQVLLLGFRSGFQVWDVEEANSVQDLVSRYDGSVSYMQVLPRPISSMRSGDKFAESRPLLVLSAYGSIAAAFNIQDRLASSGNAAIPKGQELVDGNFMPTFVRFYSLKSQTYVHELKFRSAVYSVRCSPLVVAISLATQIYCINATTLEKEHIILTNPVVSGFPGSGGGIGYGPLAVGPRWLAYSGCPTMVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSKQLAAGIVTLGDKGIKKLSRYYSELLPESNNFLQSGAQGLKGIGTLNGHAADADSVGMVIVKDIISKVVITQFKAHKSPISALCFDPSGTILVTASVQGHSINVFKIMPSSSSNSSVSGTAASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPAGGQVNFPTADISFITRNGGPVVPARQTVRRVDSGLHMPSKQNQCATGSPLTLSAVTRIHHGSNGWRGTVSSAAASATGRMGIVSGAIASAFHECKGNAVHVDNGSSEVRYHIIVFSPSGSMIQYALRVGLDSTIVLPRSSMALELVPELDARLVVEAIQKWNISQKQNRRAHDNSVDIYGDNGGFDCNKNYCEEMNGNPVVEASGNVFKAKTCREEQYHLYISEAELQMHAARSPLWTKPEIYFQVMARDGVKVDEIDHPGELEIERMPTRTIEARSKDLVPVFDYLQSSKSSHPRYLSSNSDQLLLHQKSGQFENGRLSWSWRSDVSPHDSVVSNGPEVTGRRGYKMVTETKGIVDEYECPRSQPQLSNVNNCTESISMESQPKSVNNHHKSVLRVENHFEDLGDEFE 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19389339 19394747 + Lsi04G012430.1 Lsi04g01243 661292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01243 911 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 27 859 - -
Lsi04g01243 911 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 27 859 IPR045142 GO:0006914
Lsi04g01243 911 SUPERFAMILY WD40 repeat-like 111 500 IPR036322 GO:0005515
Lsi04g01243 911 SMART WD40_4 400 440 IPR001680 GO:0005515
Lsi04g01243 911 SMART WD40_4 457 498 IPR001680 GO:0005515
Lsi04g01243 911 Pfam Breast carcinoma amplified sequence 3 549 784 IPR022175 -
Lsi04g01243 911 Gene3D - 100 588 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01243 - - - bhj:120085734 1617.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01243 Lsi-Chr4:19389339 Lsi06g00163 Lsi-Chr6:1742019 7.31E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g429 . . Bda07g00339 Bda09g00383 . Bpe08g01141 . . . . Cma01g01151 . . . Sed07g2655 . Cpe02g00750 Bhi09g01945 Tan01g4507 Cmetu04g3052 . Hepe01g1310 Mch11g1153 . . . . . . . . . . . . Lsi04g01243 . Chy04g01014 . . . . . . . Bma07g01315 Bma14g00356 . Cmo01g01204 Cmo09g00922 . . . . . . . . . . . . . Cla05g01538 Cam05g1645 Cec05g1651 Cco05g1688 Clacu05g1639 Cmu05g1534 Cre05g1644 . . . Cme04g00804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01243 Lsi_Chr04 FPKM 4.057634 4.281381 9.748276 10.123187 5.714009 4.898607 5.067999 12.70429 13.182081 13.808918