Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01245 ATGGCGTCCCCCGAAAATCCCAATTGGTTGTTTGATTATGCTTTGATCGACGATATCCCTGTACCGGATGCGAATTTTCCGGTCACGAGTTCAAGCTTTTCCTGGGCTATTCAGCCCTTAAACGGCCCCCCTGATACCGGTGTGGAAATTGATGGATCGTTGGCAGATCTGGATGGCCGTCTAGAATCTGGCTCGAAGAAGAGGGTCAGATCTGATTCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAACTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCACCCAAAACTGACAAGGCTGCAATTTTAGTTGATGCGGCTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCGAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCAAGTCTTCATGGATTTCTTTGCCAACTATACATGTGCCAATATATAAGATCGTCCATTCAATTTGCTGAGAAGAACGAGCTTCGCGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCTGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCATGTACTCCGGCCACCGGTCGCTTAA 774 48.97 MASPENPNWLFDYALIDDIPVPDANFPVTSSSFSWAIQPLNGPPDTGVEIDGSLADLDGRLESGSKKRVRSDSCSASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAARMVNQLRSETQKLKESNSSLQEKIKELKASLHGFLCQLYMCQYIRSSIQFAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19399132 19402542 - Lsi04G012450.1 Lsi04g01245 661294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01245 257 Coils Coil 173 200 - -
Lsi04g01245 257 Coils Coil 116 150 - -
Lsi04g01245 257 CDD bHLH_AtILR3_like 83 177 - -
Lsi04g01245 257 SMART finulus 81 132 IPR011598 GO:0046983
Lsi04g01245 257 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Lsi04g01245 257 PANTHER BHLH TRANSCRIPTION FACTOR 1 257 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lsi04g01245 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Lsi04g01245 257 Gene3D - 78 154 IPR036638 GO:0046983
Lsi04g01245 257 PANTHER TRANSCRIPTION FACTOR ILR3 1 257 - -
Lsi04g01245 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01245 - - - csv:101215402 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01245 Lsi-Chr4:19399132 Lsi05g00630 Lsi-Chr5:7771313 2.65E-83 dispersed
Lsi10g00160 Lsi-Chr10:2566969 Lsi04g01245 Lsi-Chr4:19399132 1.06E-79 transposed
Lsi02g00656 Lsi-Chr2:5857614 Lsi04g01245 Lsi-Chr4:19399132 4.70E-64 wgd
Lsi04g01245 Lsi-Chr4:19399132 Lsi05g00629 Lsi-Chr5:7768870 2.05E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g420 . Blo03g01435 Bda07g00338 . Bpe09g00195 Bpe08g01142 . Bma13g01026 Cmo16g00916 . Cma01g01152 Cma09g00924 . Car09g00840 Sed02g1399 Cpe06g00744 Cpe02g00749 Bhi09g01946 Tan01g4506 Cmetu06g0261 . Hepe01g1311 Mch11g1152 . . . . . . . . . . Cone14ag1119 Cone15ag1137 Lsi04g01245 . Chy04g01015 . Blo07g00920 Blo10g00804 Bda05g00737 Bda12g00887 Bpe11g00524 Bpe03g00805 Bma07g01316 Bma14g00357 . Cmo01g01205 Cmo09g00921 . . . Car16g00564 . . . . . . . . . Cla05g01539 Cam05g1646 Cec05g1652 Cco05g1689 Clacu05g1640 Cmu05g1535 Cre05g1645 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001164 4 2 3 5 4 2 3 2 2 2 2 2 4 2 2 4 2 4 3 2 3 2 3 2 2 2 2 2 2 2 78
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25183 PF00010 HLH 8.30E-09 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01245 Lsi_Chr04 FPKM 0.748752 1.548513 13.094593 13.744474 6.044486 4.145143 3.415975 3.979836 3.850784 5.655146