Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01246 ATGGAAAGACAGAAAAAGATTGTGAAGAAGACAAGGGTAATCAAAGTTGGCTCAGAGGAATCATGGGATTACTATGTTACAAAAGCTTCCAAACAAGGCTGCCCTGTTGTAGTGCATTTTAGTGCTAGCTGGTGCACACCATCAAGAGCCATGAGCCCTTTCTTTGAAGAGCTGGCCTTGGAATACAAAAGTGTTTTGTTTCTATCTGTGGATGTGGATGAAGCTAAGGAGGTTGCATCCAAGTTGGAGATAAAGGCCATGCCCACATTTGTATTGATGAAGAATGGAGCCCCTGACTATAAGCTTGTTGGAGCCAACCCAGTTGAGCTGAGGAAAAGGATCAAGGGTTTCATATATTGCTAA 363 42.98 MERQKKIVKKTRVIKVGSEESWDYYVTKASKQGCPVVVHFSASWCTPSRAMSPFFEELALEYKSVLFLSVDVDEAKEVASKLEIKAMPTFVLMKNGAPDYKLVGANPVELRKRIKGFIYC 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19409953 19412683 - Lsi04G012460.1 Lsi04g01246 661295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01246 120 ProSiteProfiles Thioredoxin domain profile. 5 119 IPR013766 -
Lsi04g01246 120 CDD TRX_family 31 115 - -
Lsi04g01246 120 PANTHER THIOREDOXIN 1 118 - -
Lsi04g01246 120 Pfam Thioredoxin 16 114 IPR013766 -
Lsi04g01246 120 Gene3D Glutaredoxin 1 119 - -
Lsi04g01246 120 SUPERFAMILY Thioredoxin-like 10 116 IPR036249 -
Lsi04g01246 120 PANTHER THIOREDOXIN-LIKE PROTEIN CXXS1 1 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01246 K03671 trxA; thioredoxin 1 - csin:114293453 169.088
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01246 Lsi-Chr4:19409953 Lsi08g01362 Lsi-Chr8:21923162 1.06E-27 dispersed
Lsi02g00657 Lsi-Chr2:5862187 Lsi04g01246 Lsi-Chr4:19409953 3.54E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g419 . . . . . . . . . . . Cma09g00923 . Car09g00839 Sed01g1426 Cpe06g00743 . Bhi09g01947 Tan01g4505 Cmetu04g0794 . Hepe01g1312 Mch11g1151 . . . . . . . . . . . . Lsi04g01246 . . . . . . . . . . . . . Cmo09g00920 . . . . . . . . . . . . . Cla05g01540 Cam05g1648 Cec05g1653 Cco05g1691 Clacu05g1641 Cmu05g1536 Cre05g1646 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003174 1 2 1 1 1 2 2 2 2 1 1 2 2 2 2 2 2 0 2 2 1 1 2 1 2 2 1 2 5 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01246 Lsi_Chr04 FPKM 2.38498 2.803356 2.515392 2.376892 2.187454 1.979844 2.436688 2.703975 2.396086 2.456018