Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01248 ATGGTTGGAACGCCAACTAATGGAAGGGCTCGCTTGTCCTTCTCGTTGATTAATGGGGGACAGGAACTTTGTCTTACAAGTACTCCGACCAGCATTGCAGGCTCCGATTGCGGTGGCATTGAGTTCACTAAAGAAGATGTTGAGGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGACAGGTTTAATCTAAAGGTCAGTCCCTCCTTTTCAGCAGTTAAGGAAAAATGTGACAACATGGTGGAATACATTAAAAAGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAATATAGCTACTTATTTGAGCAGAAGAAGTTACAAGATGAGTTGGAATCTTCTGAGATCAAGTGCAGTGAAATGGAAATGATAGTGAAGAAGAAAGAGGAAGAATTGAATTCTATCATTGTGGAACTCAGAAAGAATAATGCTTTTTTGCAAGAGAAATTCACTAAAGAAGAATCAGATAAGTTGGCTGCAGTAGAATCTCTCACCAAGGAGAAAGAGGCTAGGTTGATTATGGAGAGGTCACAGGCTTCAATCTCCGAGGAGCTTGCAAGGGCTCAACGCGAGCTCTCGAGTGCAAACCAAAAGATATTGTCTCTTAATGAGATGTACAAGAGGTTACAGGATTACATTACTAGTTTACAGCAATATAATGGCAAACTTCATACAGAGCTTTCGACTGCTGAGGATGACCTTAAACGCGTAGAGAAAGAAAAAGCTGCCATGGTGGAGGACCTCAGTATGATCAAGGGTGAACTTGCTCTGTCTAAAGCATCTCAAGACGAGGCAGTAAAGCAGAAGGATGCTATGGTGAATGAAGTTACGTGTTTAAGAAGAGAAATACAACAGGTTAGAGATGACCGAGATCGTCAACTATCTCAGGTTCAGACGCTGTCAGATGAAGTAGAGAAGTGCAGGGAGTCTGCAGGAAAGTACTGTGAGGAGCTGGATGAAATGAAGGCAAAAACAAATGAATTAGAGGCAACATGTTCTTCACAAGGTACTGAGCTAAGGGCATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTTTCTGATCTAACTGCAATGGAGACGATGCATGAATTTGAAGATCAAAAGAGACTTGTACTCGAGTTACAACAGCGACTTGCAGATGCAGAAAATAAGCTTATGGAAGGAGAGAAGCTTCGGAAAAAATTGCACAATACTATCTTGGAATTAAAAGGGAACATTCGTGTATTTTGTCGAGTGCGACCTCTGTTACCTGATGAACGTTCTAGTCCCGAAGGCAATTTTATCTCCTATCCGTCATCAGTGGAATCTCTTGGACGAGGAATCGATCTGGTGCAAAATGGGCAAAGACATTCTTTCGCATATGACAAGGTTTTTGCACCAGAAGCGACACAGGAAGATGTCTTTGTAGAAATTTCCCAGCTCGTACAAAGTGCCCTTGATGGTTATAAGGTTTGCATATTCGCCTACGGTCAAACTGGTTCAGGAAAAACCTATACAATGATGGGTCGACCAGGGCTCCTTGAGGAGAAGGGACTGATACCGCGATCATTGGAACAAATATTTCAAACTAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGAAATGCAGGTGTCGATGTTGGAAATATACAATGAAACGATCCGTGATTTACTATCAACAAATCGATCAACTTCTGATGTGCTACGAGCAGAAAATGGTTCTCCCATAAAACCATACTCAATTAAACACGATGCAAGTGGAAATACTCAAGTTTCTGATCTTACAGTCGTGGATGTTCGTAGTGCCAGGGAGGTCTCATTTCTATTAGAGCAAGCTTCTCGTAGCAGATCCGTTGGCAAAACTCAAATGAACGAGCAATCGTCAAGAAGTCATTTTGTGTTTACTCTCAAAATATCCGGTATCAATGAGAGTACTGATCAACAAGTACAAGGGATTTTGAATTTAATCGATCTTGCTGGGAGCGAGCGTCTTTCCAAGAGCGGGTCAACAGGAGATCGACTGAAAGAAACCCAAGCCATAAATAAAAGTTTATCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTTCCATTTAGAAACTCAAAGCTTACGTATCTTCTTCAGCCGTGTCTCGGTGGAGATTCAAAGACGTTGATGTTTGTAAATATCTCTCCTGATTCCTCCTCGGCCAATGAATCACTCTGCTCGCTTCGCTTCGCTGCCCGGGTCAATGCTTGCGAGATCGGTACTCCTCGGCGTCTAACCAATACACGACCTTAA 2286 42.08 MVGTPTNGRARLSFSLINGGQELCLTSTPTSIAGSDCGGIEFTKEDVEALLNEKLKRKDRFNLKVSPSFSAVKEKCDNMVEYIKKLKLCIKWFQELEYSYLFEQKKLQDELESSEIKCSEMEMIVKKKEEELNSIIVELRKNNAFLQEKFTKEESDKLAAVESLTKEKEARLIMERSQASISEELARAQRELSSANQKILSLNEMYKRLQDYITSLQQYNGKLHTELSTAEDDLKRVEKEKAAMVEDLSMIKGELALSKASQDEAVKQKDAMVNEVTCLRREIQQVRDDRDRQLSQVQTLSDEVEKCRESAGKYCEELDEMKAKTNELEATCSSQGTELRALQNHLAAAENKLQVSDLTAMETMHEFEDQKRLVLELQQRLADAENKLMEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPEGNFISYPSSVESLGRGIDLVQNGQRHSFAYDKVFAPEATQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGLLEEKGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNETIRDLLSTNRSTSDVLRAENGSPIKPYSIKHDASGNTQVSDLTVVDVRSAREVSFLLEQASRSRSVGKTQMNEQSSRSHFVFTLKISGINESTDQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSANESLCSLRFAARVNACEIGTPRRLTNTRP 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19443359 19448880 - Lsi04G012480.1 Lsi04g01248 661297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01248 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 746 IPR027417 -
Lsi04g01248 761 Coils Coil 339 359 - -
Lsi04g01248 761 Coils Coil 311 331 - -
Lsi04g01248 761 Coils Coil 178 205 - -
Lsi04g01248 761 Coils Coil 111 156 - -
Lsi04g01248 761 SMART kinesin_4 406 756 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 Gene3D - 177 355 - -
Lsi04g01248 761 PRINTS Kinesin heavy chain signature 649 667 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 PRINTS Kinesin heavy chain signature 618 635 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 PRINTS Kinesin heavy chain signature 698 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 PRINTS Kinesin heavy chain signature 484 505 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 Coils Coil 269 303 - -
Lsi04g01248 761 PANTHER KINESIN-LIKE PROTEIN 6 761 - -
Lsi04g01248 761 PANTHER KINESIN-LIKE PROTEIN KLP-3 6 761 - -
Lsi04g01248 761 Coils Coil 367 401 - -
Lsi04g01248 761 Pfam Kinesin motor domain 414 746 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 ProSiteProfiles Kinesin motor domain profile. 408 748 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g01248 761 Gene3D Kinesin motor domain 356 750 IPR036961 -
Lsi04g01248 761 Coils Coil 220 247 - -
Lsi04g01248 761 CDD KISc_C_terminal 406 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01248 K10405 KIFC1; kinesin family member C1 - csv:101215636 1403.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00808 Lsi-Chr1:6382506 Lsi04g01248 Lsi-Chr4:19443359 4.49E-42 transposed
Lsi01g01802 Lsi-Chr1:17747803 Lsi04g01248 Lsi-Chr4:19443359 1.64E-65 transposed
Lsi02g01801 Lsi-Chr2:23822236 Lsi04g01248 Lsi-Chr4:19443359 2.63E-81 transposed
Lsi03g01095 Lsi-Chr3:20879148 Lsi04g01248 Lsi-Chr4:19443359 2.62E-87 transposed
Lsi03g01653 Lsi-Chr3:27709178 Lsi04g01248 Lsi-Chr4:19443359 4.32E-73 transposed
Lsi06g00073 Lsi-Chr6:643076 Lsi04g01248 Lsi-Chr4:19443359 5.92E-87 transposed
Lsi06g00195 Lsi-Chr6:2136480 Lsi04g01248 Lsi-Chr4:19443359 4.32E-43 transposed
Lsi07g00831 Lsi-Chr7:9269829 Lsi04g01248 Lsi-Chr4:19443359 2.93E-93 transposed
Lsi07g01033 Lsi-Chr7:15651103 Lsi04g01248 Lsi-Chr4:19443359 9.24E-80 transposed
Lsi09g00255 Lsi-Chr9:2644587 Lsi04g01248 Lsi-Chr4:19443359 5.41E-93 transposed
Lsi11g00545 Lsi-Chr11:5675962 Lsi04g01248 Lsi-Chr4:19443359 2.00E-91 transposed
Lsi02g00658 Lsi-Chr2:5866849 Lsi04g01248 Lsi-Chr4:19443359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01248 Lsi_Chr04 FPKM 54.887356 62.908997 42.961128 44.728138 46.638718 41.411961 47.213223 41.763168 39.157951 37.27927