Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01249 ATGACATTTCGACAACTTATGGGTGTTGCAAAAAGGACATGTTTGGTTGTTCTGGTGATTCTCATCTGTGCTTCTTTAGCAACTTGCTTGAAGGACCACCAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGTAGACGGTGCTGACCTATGCTTTGAAGAAAGACCAGGAAGCACAAGTGGAATTAATTTTGAATGTCGGATGCTGTCAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGAAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTGGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGCTAAGTTCTAGATGGCTTCGAAGTGCCAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATCAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATTGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTGAGTACTCTATTCAGTGTTCTCACAAGCGTTCTTCGCCCAAGTATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAATCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGATGGTGCACGTACTTCAATTCAGGGACCTCCATCTTTTGGAGTTGCTGGAATTGCCAGTAATTCATCTTTTGGAACGACGAATATGGATGGCAGTACTATGGGTTTGGTGCCACCTCCTCCAGGAGCAGTGCCAGTCACCTCAGAAATTATACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAATGCCCATCGTCTTTTAAGCCTCCATCCACCGTGGCTAGTCCTCCTCCTGCACCACCTCCTGCACCACCACCAAGACCTCCTGGAAATTCAGGTTGCCCTCCAGGACCTCCTCCACCTCCACCACCCGTACCAGGCAAGGCAGGCCCTCGCCCGCCACCACCTCCCAAAGGTGGTATTGCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCACGACCTCCGAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCGGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGGTATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACATCAATACATTCAGATCATTGATTCAAAGAAAGCGCAAAATCTGTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACACCAGAAGAAGAACTTAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGGGCACAAGCATTCAAATTGGACACTCTCTTAAAATTGTCAGATGTGAAAGGAAAAGATGGCAAGACTACGTTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCTCGGAATGCTACAGGAAGCCAGAGCTTCTCAAGCACCTCATCATCAAATGATCTGCTGGACGGAACTACTAACGACACAGAAGAGCATTACCGTAACTTGGGTCTTCAGGTCGTATCCGGGTTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATAGATGCCGATGCCTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACGAGAGACTTTCTGAACAAAGACATGCAGGGTCTAGGTGAAGAGAGTCCATTTCACGATACACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTTCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTGCGGTTGTTTGTAATCGTGCGAGATTTCTTGATAATGATAGATAAGATATGCCGAGAAATAAAGGATGCACAGAAAAAGCTGGCAAAGGGACACAGAAAGGCAGCATCGTCTTCTGATATCCATCACCCCCTCTCGTCGTCTACTGATACCAATCAACCCCCTCCGTCGTCTACTGATACCAATCAACCCCCTCCGTCGTCTACTGATACCAATCACCCTCCGTCGTCTACTGATACCAATCAACCCCCTTCGTCGTCTACTGATACCAATCACCCCCCTTTGTCGTCTACTGTTGTCAATCACCCCCCTGCAACTACAGTTTCTGATCTACGACACTCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTACTGATCGTCGGATGGGTAACTCAAGTTCAGACGATGATGATGATGAAAGTCCATAG 2976 45.43 MTFRQLMGVAKRTCLVVLVILICASLATCLKDHQEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAVDGADLCFEERPGSTSGINFECRMLSKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSAKEVPAPAPESSADQKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSEYSIQCSHKRSSPKYSAFGNSLKDDKFMNQSSSLSHHQRAPSLDGSLHIVSDGARTSIQGPPSFGVAGIASNSSFGTTNMDGSTMGLVPPPPGAVPVTSEIIPPLKPPPGRAVPLPPECPSSFKPPSTVASPPPAPPPAPPPRPPGNSGCPPGPPPPPPPVPGKAGPRPPPPPKGGIAPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAHQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNATGSQSFSSTSSSNDLLDGTTNDTEEHYRNLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFLNKDMQGLGEESPFHDTLKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKICREIKDAQKKLAKGHRKAASSSDIHHPLSSSTDTNQPPPSSTDTNQPPPSSTDTNHPPSSTDTNQPPSSSTDTNHPPLSSTVVNHPPATTVSDLRHSPSPDLNQLIFPAITDRRMGNSSSDDDDDESP 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19469447 19476804 + Lsi04G012490.1 Lsi04g01249 661298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01249 991 MobiDBLite consensus disorder prediction 168 196 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 878 991 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 886 962 - -
Lsi04g01249 991 PANTHER FORMIN-LIKE PROTEIN 3 10 141 - -
Lsi04g01249 991 SUPERFAMILY Formin homology 2 domain (FH2 domain) 403 877 - -
Lsi04g01249 991 Pfam Formin Homology 2 Domain 459 859 IPR015425 -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 714 732 - -
Lsi04g01249 991 ProSiteProfiles Formin homology-2 (FH2) domain profile. 453 886 IPR015425 -
Lsi04g01249 991 SMART it6_source 453 875 IPR015425 -
Lsi04g01249 991 PANTHER FORMIN-RELATED 10 141 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi04g01249 991 MobiDBLite consensus disorder prediction 337 446 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 323 458 - -
Lsi04g01249 991 Gene3D Formin, FH2 domain 458 889 IPR042201 -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 714 733 - -
Lsi04g01249 991 PANTHER FORMIN-RELATED 163 885 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi04g01249 991 MobiDBLite consensus disorder prediction 179 196 - -
Lsi04g01249 991 PANTHER FORMIN-LIKE PROTEIN 3 163 885 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01249 Lsi-Chr4:19469447 Lsi05g01149 Lsi-Chr5:19328641 2.28E-120 dispersed
Lsi04g01249 Lsi-Chr4:19469447 Lsi10g00514 Lsi-Chr10:7336609 2.60E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01249 - - csv:101213072 926.776