Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01249 ATGACATTTCGACAACTTATGGGTGTTGCAAAAAGGACATGTTTGGTTGTTCTGGTGATTCTCATCTGTGCTTCTTTAGCAACTTGCTTGAAGGACCACCAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGTAGACGGTGCTGACCTATGCTTTGAAGAAAGACCAGGAAGCACAAGTGGAATTAATTTTGAATGTCGGATGCTGTCAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGAAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTGGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGCTAAGTTCTAGATGGCTTCGAAGTGCCAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATCAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATTGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAGAGTGGCTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTGAGTACTCTATTCAGTGTTCTCACAAGCGTTCTTCGCCCAAGTATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAATCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGATGGTGCACGTACTTCAATTCAGGGACCTCCATCTTTTGGAGTTGCTGGAATTGCCAGTAATTCATCTTTTGGAACGACGAATATGGATGGCAGTACTATGGGTTTGGTGCCACCTCCTCCAGGAGCAGTGCCAGTCACCTCAGAAATTATACCTCCTCTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAATGCCCATCGTCTTTTAAGCCTCCATCCACCGTGGCTAGTCCTCCTCCTGCACCACCTCCTGCACCACCACCAAGACCTCCTGGAAATTCAGGTTGCCCTCCAGGACCTCCTCCACCTCCACCACCCGTACCAGGCAAGGCAGGCCCTCGCCCGCCACCACCTCCCAAAGGTGGTATTGCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCACGACCTCCGAAGCCTTTTGCTTCAGGTGATGATGATATGGACGAATCGGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGGTATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACATCAATACATTCAGATCATTGATTCAAAGAAAGCGCAAAATCTGTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGAACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACACCAGAAGAAGAACTTAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTTGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTTAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGGGCACAAGCATTCAAATTGGACACTCTCTTAAAATTGTCAGATGTGAAAGGAAAAGATGGCAAGACTACGTTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGCTCGGAATGCTACAGGAAGCCAGAGCTTCTCAAGCACCTCATCATCAAATGATCTGCTGGACGGAACTACTAACGACACAGAAGAGCATTACCGTAACTTGGGTCTTCAGGTCGTATCCGGGTTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATAGATGCCGATGCCTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACGAGAGACTTTCTGAACAAAGACATGCAGGGTCTAGGTGAAGAGAGTCCATTTCACGATACACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTTCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTGCGGTTGTTTGTAATCGTGCGAGATTTCTTGATAATGATAGATAAGATATGCCGAGAAATAAAGGATGCACAGAAAAAGCTGGCAAAGGGACACAGAAAGGCAGCATCGTCTTCTGATATCCATCACCCCCTCTCGTCGTCTACTGATACCAATCAACCCCCTCCGTCGTCTACTGATACCAATCAACCCCCTCCGTCGTCTACTGATACCAATCACCCTCCGTCGTCTACTGATACCAATCAACCCCCTTCGTCGTCTACTGATACCAATCACCCCCCTTTGTCGTCTACTGTTGTCAATCACCCCCCTGCAACTACAGTTTCTGATCTACGACACTCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTACTGATCGTCGGATGGGTAACTCAAGTTCAGACGATGATGATGATGAAAGTCCATAG 2976 45.43 MTFRQLMGVAKRTCLVVLVILICASLATCLKDHQEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAVDGADLCFEERPGSTSGINFECRMLSKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSAKEVPAPAPESSADQKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSEYSIQCSHKRSSPKYSAFGNSLKDDKFMNQSSSLSHHQRAPSLDGSLHIVSDGARTSIQGPPSFGVAGIASNSSFGTTNMDGSTMGLVPPPPGAVPVTSEIIPPLKPPPGRAVPLPPECPSSFKPPSTVASPPPAPPPAPPPRPPGNSGCPPGPPPPPPPVPGKAGPRPPPPPKGGIAPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAHQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAARNATGSQSFSSTSSSNDLLDGTTNDTEEHYRNLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFLNKDMQGLGEESPFHDTLKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKICREIKDAQKKLAKGHRKAASSSDIHHPLSSSTDTNQPPPSSTDTNQPPPSSTDTNHPPSSTDTNQPPSSSTDTNHPPLSSTVVNHPPATTVSDLRHSPSPDLNQLIFPAITDRRMGNSSSDDDDDESP 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19469447 19476804 + Lsi04G012490.1 Lsi04g01249 661298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01249 991 MobiDBLite consensus disorder prediction 168 196 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 878 991 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 886 962 - -
Lsi04g01249 991 PANTHER FORMIN-LIKE PROTEIN 3 10 141 - -
Lsi04g01249 991 SUPERFAMILY Formin homology 2 domain (FH2 domain) 403 877 - -
Lsi04g01249 991 Pfam Formin Homology 2 Domain 459 859 IPR015425 -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 714 732 - -
Lsi04g01249 991 ProSiteProfiles Formin homology-2 (FH2) domain profile. 453 886 IPR015425 -
Lsi04g01249 991 SMART it6_source 453 875 IPR015425 -
Lsi04g01249 991 PANTHER FORMIN-RELATED 10 141 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi04g01249 991 MobiDBLite consensus disorder prediction 337 446 - -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 323 458 - -
Lsi04g01249 991 Gene3D Formin, FH2 domain 458 889 IPR042201 -
Lsi04g01249 991 MobiDBLite consensus disorder prediction 714 733 - -
Lsi04g01249 991 PANTHER FORMIN-RELATED 163 885 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi04g01249 991 MobiDBLite consensus disorder prediction 179 196 - -
Lsi04g01249 991 PANTHER FORMIN-LIKE PROTEIN 3 163 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01249 - - - csv:101213072 926.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01249 Lsi-Chr4:19469447 Lsi05g01149 Lsi-Chr5:19328641 2.28E-120 dispersed
Lsi04g01249 Lsi-Chr4:19469447 Lsi10g00514 Lsi-Chr10:7336609 2.60E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00020 . 462 942 FH2 protein (formin) Gene Family AT3G25500 66.5 3.9e-165 579.3
Lsi10g00514 . 431 887 FH2 protein (formin) Gene Family AT3G25500 60.3 2.7e-142 503.4
Lsi06g00120 . 490 887 FH2 protein (formin) Gene Family AT3G25500 51.5 1.9e-103 374.4
Lsi05g01149 . 644 1067 FH2 protein (formin) Gene Family AT2G43800 63.4 1.2e-141 501.1
Lsi10g00514 . 465 903 FH2 protein (formin) Gene Family AT2G43800 55.1 2.3e-126 450.3
Lsi10g00161 . 285 593 FH2 protein (formin) Gene Family AT4G15200 54.4 7.6e-52 201.8
Lsi04g01249 . 447 593 FH2 protein (formin) Gene Family AT4G15200 66.7 4.3e-47 186.0
Lsi04g01249 . 7 885 FH2 protein (formin) Gene Family AT5G54650 51.5 1.3e-172 604.0
Lsi10g00161 . 447 915 FH2 protein (formin) Gene Family AT5G54650 61.1 3.5e-154 542.7
Lsi05g01149 . 655 1056 FH2 protein (formin) Gene Family AT5G54650 50.8 2.8e-103 373.6
Lsi10g00514 . 31 906 FH2 protein (formin) Gene Family AT5G67470 57.6 6.2e-236 814.3
Lsi05g01149 . 636 1088 FH2 protein (formin) Gene Family AT5G67470 59.5 1.2e-135 481.1
Lsi11g00020 . 503 938 FH2 protein (formin) Gene Family AT5G67470 60.8 1.3e-129 461.1
Lsi06g00120 . 490 889 FH2 protein (formin) Gene Family AT5G67470 50.6 7.4e-104 375.6
Lsi04g00506 . 354 834 FH2 protein (formin) Gene Family AT1G59910 52.2 1.6e-125 447.6
Lsi05g01149 . 676 1057 FH2 protein (formin) Gene Family AT5G48360 52.9 3.0e-101 366.7
Lsi10g00514 . 489 864 FH2 protein (formin) Gene Family AT5G48360 50.5 9.0e-90 328.6
Lsi10g00514 . 469 863 FH2 protein (formin) Gene Family AT3G05470 52.3 2.4e-107 387.1
Lsi04g01249 . 453 868 FH2 protein (formin) Gene Family AT3G05470 50.2 1.2e-106 384.8
Lsi06g01445 CCT 21 368 FH2 protein (formin) Gene Family AT1G31810 63.2 3.7e-114 410.2
Lsi06g01444 . 1 322 FH2 protein (formin) Gene Family AT1G31810 53.5 2.8e-106 384.0
Lsi06g01445 CCT 20 374 FH2 protein (formin) Gene Family AT5G07650 68.2 5.1e-125 445.7
Lsi02g00091 CCT 995 1284 FH2 protein (formin) Gene Family AT5G07650 69.7 6.7e-109 392.1
Lsi04g02074 . 1059 1378 FH2 protein (formin) Gene Family AT5G07650 60.3 5.3e-98 355.9
Lsi06g01160 . 906 1209 FH2 protein (formin) Gene Family AT5G07650 57.8 7.2e-95 345.5
Lsi06g01445 CCT 21 367 FH2 protein (formin) Gene Family AT5G07770 65.1 1.2e-115 414.1
Lsi02g00091 CCT 909 1284 FH2 protein (formin) Gene Family AT5G07770 61.3 1.6e-115 413.7
Lsi04g02074 . 983 1370 FH2 protein (formin) Gene Family AT5G07770 54.2 1.1e-105 380.9
Lsi06g01160 . 829 1201 FH2 protein (formin) Gene Family AT5G07770 53.7 1.2e-102 370.9
Lsi04g02074 . 975 1378 FH2 protein (formin) Gene Family AT3G32400 69.9 3.6e-153 538.5
Lsi06g01160 . 836 1210 FH2 protein (formin) Gene Family AT3G32400 65.8 2.0e-135 479.6
Lsi02g00091 CCT 879 1284 FH2 protein (formin) Gene Family AT3G32400 56.3 1.9e-117 419.9
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT3G32400 63.0 4.2e-117 418.7
Lsi06g01160 . 3 1210 FH2 protein (formin) Gene Family AT2G25050 50.6 8.8e-267 917.1
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT2G25050 66.4 1.0e-121 435.3
Lsi06g01444 . 1 316 FH2 protein (formin) Gene Family AT2G25050 61.7 1.1e-112 405.2
Lsi06g01445 CCT 21 374 FH2 protein (formin) Gene Family AT5G07780 62.0 7.7e-105 377.9
Lsi02g00091 CCT 910 1284 FH2 protein (formin) Gene Family AT5G07780 55.8 1.0e-101 367.5
Lsi06g01160 . 836 1209 FH2 protein (formin) Gene Family AT5G07780 50.2 4.5e-89 325.5
Lsi06g01444 . 1 590 FH2 protein (formin) Gene Family AT5G07740 57.6 2.5e-166 583.9
Lsi06g01445 CCT 21 383 FH2 protein (formin) Gene Family AT5G07740 75.5 2.9e-143 507.3
Lsi06g01445 CCT 14 381 FH2 protein (formin) Gene Family AT5G07760 67.0 6.8e-123 438.7
Lsi02g00091 CCT 994 1284 FH2 protein (formin) Gene Family AT5G07760 69.4 1.8e-107 387.5
Lsi04g02074 . 1058 1387 FH2 protein (formin) Gene Family AT5G07760 58.4 3.8e-97 353.2
Lsi06g01160 . 905 1209 FH2 protein (formin) Gene Family AT5G07760 60.2 2.5e-96 350.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01249 Lsi_Chr04 FPKM 3.671795 3.472139 0.052534 0.0 0.15511 0.012743 0.0 0.59344 0.807127 0.921343