Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01251 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAACCAGAGCCATCAGAAGTCTATGATCCAAAGTGTAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCAAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATCACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTGGGAAATGCTGGCTTTGGCGGGGGCGGGGGTGGGAATTCGCCATTTTCCGGTACACTTAGACCCGGAACTCCTGGTCCTGGGGAGCACTTTGTTAACAACTCCAATTCTCCTTTTAGTACCACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCCTTTATCATATAGAGATGGGTCTGCAGCTGGGAGTACTACTAAATCTAAGGTGGGTGGGGAAGTTCATACAAGCAAAAGGTTCTCCCCGCTAACTGAACTAAACGGTAATACATTTTCGATGGTTACTTGCCATAAATGTGGAGAAAAGTTCTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACTGAGCTTGTGGAAGGCGATTCATCGAGGAAAATTGTCGAAATAATATGTAGAACAAACTTGTTGAAATCGGAGAACAATGGAAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACATTAGCTGGATTTGAAGAATACAGGGAAATGGTGAAGATCAAGGCAAGTAAGCTTTCAAAGAAACACCCTCGATGCCTTGCTGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCACTTGGACTAAATGGTTCCTCCAGCCTCTGCATATCACAGAAATGCAGTGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCGGTAAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAAAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTTTAGCTGGAAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAATCCTAGAGCTTTGCTTCCTTGTTTTGTTGTAATTTGCAAGCCATGA 1326 43.74 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNAGFGGGGGGNSPFSGTLRPGTPGPGEHFVNNSNSPFSTTSISAARKLPSPLSYRDGSAAGSTTKSKVGGEVHTSKRFSPLTELNGNTFSMVTCHKCGEKFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCSVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALIICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19487967 19490104 + Lsi04G012510.1 Lsi04g01251 661300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01251 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 441 - -
Lsi04g01251 441 SUPERFAMILY ADP-ribosylation 233 440 - -
Lsi04g01251 441 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Lsi04g01251 441 Gene3D - 238 440 - -
Lsi04g01251 441 MobiDBLite consensus disorder prediction 120 152 - -
Lsi04g01251 441 PANTHER - 2 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00378 Lsi-Chr1:3328454 Lsi04g01251 Lsi-Chr4:19487967 2.76E-77 dispersed
Lsi04g01251 Lsi-Chr4:19487967 Lsi05g00669 Lsi-Chr5:8814260 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25184 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01251 - - csv:101213316 790.801