Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01253 ATGCCTTTCCTCACCGTGTGGTCGGCGAAGTCTTCCGCCGTCAAGTTCTGTCCAACTTCCGTCATTCTCCGCGGTACAACAACGACCTTCTCGCCGTTACCGTTAAATCTCCATCGATTCATGTTCTCAAATTCCGTTTCTGCAAGTGTTTTATCAGATTGGGAATTGTTGATTTTTGTTCTTCTTCTGTGGGAAATTGATAACAATTTGTTGTTAGGTCTTTCATATACATCTTCTTATTCCTCTGTTCCATCTTTACCCAATACTTTGCTTGGACCCTTGAAATTCAACTTAAGTAATTCACCAGCTTTATCTCCCCTATTTTCGTCGCATTTTGAATCTGATTCCTTTACCACAACAACTGTGAGTGATAGTCAGGATCAAAGGAACTCCCCTGATAATCTCTCTGGACTTAGCCCTTCTTGTAATTCCTCATTTGAAACGAGTAGCTTTAATCAAATAGCCTCTTCCAATTTGGATCATTGCGAGGACGAGACTCGACGATTCTATTCGGGGTCGAATGCATTTGTTTACAACGGATGCTTGACTGACAACATAAGCTACGCTTTGAAACAATTGGAGAGTGTTCTGATGGGGCCGGATAATGAGGAAGTTGTGAGCAAGCCTGATGATTCGTTTGGAGAGAGTAGCAGGCAACAGATGATGGGGCAGAGGTCCTACTCATGGAGCCAAGATCGACATGGTGGGTCATATGCTGTTCAGTCTCAGACATTGCTGGTGTCGAGAAGCCAACAATCTGAGGCAGTTCACTTGGGGAAACGACTGAAATCGATGGATGAATCAATATTGCAGCAGGGAGGATTGCCATCAGATAATTTGAAGGAGTTGTTGATTGCTTGTGCAAAAGCTTTAGCTGAAAACAGGATGAAGGATTTTGATAACTTGGTAGCCACGGCAAGAGGGGCCGTGTCTATTGGTGGAGAACCAATCCAGCGTCTTGGCGCTTACATGGTGGAAGGGTTGGTGGCGAGGAAAGAAGAATCGGGGGTGAATATATATCGGGCTCTAAACTGTAGAGAGCCTGCAAGTGATGATTTGCTATCTTATATGCATATGCTATATGAAATCTGCCCCTATTTGAAGTTCGGTTACATGGCAGCAAATGGGGCGATTGCCGAAGCCTGCAGAAACGAAGACCGCATCCACATCATAGACTTCCAGATTACTCAGGGGACGCAGTGGTTAACTCTTCTTCAGGCACTTGCAGCAAGGCCCAGTGGGGCTCCCCATGTGAGGATAACCGGTATCGATGACCCTGTTTCTAAATATGCCCGTGGCGATGGGTTGGAGGTCGTGGAGAGGCGGTTGGCCGAAATCTCCTTGAAGTATGGCATACCAGTGGAGTTTCATGGTATACCAGTTTTTGCTCCGGACATCACGCTTGATATGCTCGACATCAGACCTGGAGAGGCTTTGGCTGTAAACTTTCCATTGCAACTTCATCATACCCCGGACGAAAGCGTCGACGTGGACAATCCACGTGACGGTCTGCTGAGAATGGTGAAGTCATTATCCCCAAAGGTAGTAACTTTGGTAGAGCAAGAATCAAACACCAACACAACCCCTTTCTTCAGTAGGTTTGTGGAAACTTTAGATTACTACTTGGCTATCTTTGAGTCCATTGATGTCACTCTACCAAGGAACAACAAGAAGCGCATCAATGTCGAGCAACATTGTTTGGCAAAAGATATCGTTAATGTCATTGCTTGCGAAGGGAGGGAACGGGAAGAGCGCCACGAACTCTTCGGCAAGTGGAAGTCGAGGTTGACAATGGCAGGGTTCCACCAGTTCCCATTGAGCACTTACGTCAACTCCGTCATTAGGAGCCTGCTAAGGTGTTATTCGGAGCATTACACGCTCGTCGAAAAGGATGGAGCAATGCTGCTGGGGTGGAAAAACAGGAACTTGATATCTGCCTCGGCCTGGTATTAA 1953 46.24 MPFLTVWSAKSSAVKFCPTSVILRGTTTTFSPLPLNLHRFMFSNSVSASVLSDWELLIFVLLLWEIDNNLLLGLSYTSSYSSVPSLPNTLLGPLKFNLSNSPALSPLFSSHFESDSFTTTTVSDSQDQRNSPDNLSGLSPSCNSSFETSSFNQIASSNLDHCEDETRRFYSGSNAFVYNGCLTDNISYALKQLESVLMGPDNEEVVSKPDDSFGESSRQQMMGQRSYSWSQDRHGGSYAVQSQTLLVSRSQQSEAVHLGKRLKSMDESILQQGGLPSDNLKELLIACAKALAENRMKDFDNLVATARGAVSIGGEPIQRLGAYMVEGLVARKEESGVNIYRALNCREPASDDLLSYMHMLYEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQITQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKYARGDGLEVVERRLAEISLKYGIPVEFHGIPVFAPDITLDMLDIRPGEALAVNFPLQLHHTPDESVDVDNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFSRFVETLDYYLAIFESIDVTLPRNNKKRINVEQHCLAKDIVNVIACEGREREERHELFGKWKSRLTMAGFHQFPLSTYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWY 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19527943 19530358 + Lsi04G012530.1 Lsi04g01253 661302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01253 650 MobiDBLite consensus disorder prediction 120 140 - -
Lsi04g01253 650 PANTHER CHITIN-INDUCIBLE GIBBERELLIN-RESPONSIVE PROTEIN 1 76 649 - -
Lsi04g01253 650 ProSiteProfiles GRAS family profile. 271 650 IPR005202 -
Lsi04g01253 650 Pfam GRAS domain family 280 649 IPR005202 -
Lsi04g01253 650 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 649 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01253 Lsi-Chr4:19527943 Lsi05g00522 Lsi-Chr5:6546210 5.48E-171 dispersed
Lsi04g01253 Lsi-Chr4:19527943 Lsi10g00057 Lsi-Chr10:977937 1.48E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25185 PF03514 GRAS 3.00E-126 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01253 - - csv:101216606 1018.07