Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01255 ATGCAAACCTTTCTCCAAAATCCAGGATATTTCGGTAATTTCAAGAAATACCCTCTTTCTCTTTGCGTTATAGAAGAGTTCCCATTCGCCCAAAAACTCTGCTTTTCTGTCCAAGTTTTTCTTCGCCTCTTCCAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGTGGTGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAGCCCAGCATGAACGCTTTCCTTTCTGGTCGCCTGTTCTCGAGCGCTTCTACTTCAAGTTTCATTCCTCCGCCGCTCCCTCCGTCGGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCAAGAGTCGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCCGAGAACAATGGTCTCCCTCCATATGGCCGTCAATGA 684 48.1 MQTFLQNPGYFGNFKKYPLSLCVIEEFPFAQKLCFSVQVFLRLFQKGFSSLNPKAMALRSAAVVAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSMNAFLSGRLFSSASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGLPPYGRQ 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19552123 19555652 - Lsi04G012550.1 Lsi04g01255 661304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01255 227 SUPERFAMILY RNA-binding domain, RBD 116 219 IPR035979 GO:0003676
Lsi04g01255 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 202 IPR000504 GO:0003723
Lsi04g01255 227 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 105 220 - -
Lsi04g01255 227 SMART rrm1_1 135 208 IPR000504 GO:0003723
Lsi04g01255 227 PANTHER TRANSFORMER-2-RELATED 105 220 - -
Lsi04g01255 227 Gene3D - 121 227 IPR012677 -
Lsi04g01255 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01255 - - - csv:101217072 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00047 Lsi-Chr2:444584 Lsi04g01255 Lsi-Chr4:19552123 1.89E-17 dispersed
Lsi03g01868 Lsi-Chr3:30114250 Lsi04g01255 Lsi-Chr4:19552123 1.47E-20 dispersed
Lsi03g02096 Lsi-Chr3:32236414 Lsi04g01255 Lsi-Chr4:19552123 2.44E-13 dispersed
Lsi04g01255 Lsi-Chr4:19552123 Lsi10g00366 Lsi-Chr10:5657381 1.90E-15 dispersed
Lsi04g01879 Lsi-Chr4:25924179 Lsi04g01255 Lsi-Chr4:19552123 3.63E-12 dispersed
Lsi05g00391 Lsi-Chr5:4964508 Lsi04g01255 Lsi-Chr4:19552123 5.19E-11 dispersed
Lsi06g00546 Lsi-Chr6:6865743 Lsi04g01255 Lsi-Chr4:19552123 3.28E-10 dispersed
Lsi09g00890 Lsi-Chr9:10458969 Lsi04g01255 Lsi-Chr4:19552123 5.85E-10 dispersed
Lsi04g01255 Lsi-Chr4:19552123 Lsi01g01405 Lsi-Chr1:12198357 1.58E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01255 Lsi_Chr04 FPKM 52.314465 56.174084 45.823299 47.955276 33.923084 38.314968 34.502949 39.79863 40.441772 37.842926