Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01261 ATGGCCGCCCTGTTTGGGAGCTGGAATTTGAGGACTCGGATCTCAATACTCATCATCTTGTTGGTGGGTTTGTGTTGTTCTTGTTTCTGCAGCAATTCTGGCGAAGATTCTCCTTCGATTCATTCGCTTTTGCGGTCGATGGGTCTTCCAGCAGGGCTGGTGCCGAAGCAAGTGAAATCTTACACACATGAAAATGGTCGGTTGGAAGTGTATTTGGATGCTCCATGTATGGCGAAATATGAGAACAGAGTGATTTTCGACACTGTTTTTAGTGCTAATCTTAGCTATGGCAGCTTGATTGGAGTGGAGGGTATGTCTCAAGAGGAGCTTTTTCTATGGCTCCCTGTTAAAGATATCATTGTTAATTACCCTACTTCTGGTGTCATTCTTATTGACATTGGTGTTGCTCATAAACAACTCTCTTTGTCTCTCTTTGAAGATCCTCCTGATTGTAAACCTCAAGGTGAATTTTCACTTATTTCTCCTCTCTCTCTCTTGATTTTCATGGGGTTTGCCTGA 519 42.97 MAALFGSWNLRTRISILIILLVGLCCSCFCSNSGEDSPSIHSLLRSMGLPAGLVPKQVKSYTHENGRLEVYLDAPCMAKYENRVIFDTVFSANLSYGSLIGVEGMSQEELFLWLPVKDIIVNYPTSGVILIDIGVAHKQLSLSLFEDPPDCKPQGEFSLISPLSLLIFMGFA 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19721771 19722289 - Lsi04G012610.1 Lsi04g01261 661310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01261 172 Pfam Protein of unknown function, DUF538 41 146 IPR007493 -
Lsi04g01261 172 SUPERFAMILY At5g01610-like 12 156 IPR036758 -
Lsi04g01261 172 PANTHER T31J12.3 PROTEIN-RELATED 14 156 IPR007493 -
Lsi04g01261 172 PANTHER - 14 156 - -
Lsi04g01261 172 Gene3D - 26 157 IPR036758 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01261 - - - csv:101218420 246.128
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01261 Lsi-Chr4:19721771 Lsi05g00648 Lsi-Chr5:8241465 9.77E-61 dispersed
Lsi04g01261 Lsi-Chr4:19721771 Lsi04g00383 Lsi-Chr4:3789205 2.02E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g389 . . . Bda09g00379 Bpe09g00204 Bpe08g01146 Bma10g00527 Bma13g01009 Cmo16g00927 . Cma01g01167 Cma09g00912 . Car09g00828 Sed04g3131 Cpe06g00733 Cpe02g00735 Bhi09g01969 Tan01g4479 Cmetu04g1855 . Hepe01g1330 Mch11g1131 . . . . . . . . . Cone9ag0118 Cone14ag1115 Cone15ag1129 Lsi04g01261 . Chy04g01040 . Blo07g00927 . Bda05g00744 Bda12g00878 . Bpe03g00810 Bma07g01320 . . Cmo01g01222 Cmo09g00905 . . Car04g00868 Car16g00580 . Cpe01g00841 . . . . . . . Cla05g01559 Cam05g1666 Cec05g1671 Cco05g1711 Clacu05g1661 Cmu05g1554 Cre05g1667 . . . Cme04g00766
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013035 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01261 Lsi_Chr04 FPKM 0.099304 0.0 0.108946 0.303386 0.378338 0.69736 0.287372 0.231965 0.163684 0.183627