Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01263 ATGCCTGAAGAAGCTCCTCAAAAGTCCTCATTTTTCTCCACCACTGAATACTACAAACTATTAGAGAAAAACAAGAAGACTCTTCAATTCATTGAAGATGTCACTGCCAACGCCGACCAAGTCCAGCGTCGCGTTCTCTCTGAGATCCTCTCTCGCAATGCCGACGTCGAGTACCTCCATCGACATGGCCTCCATGGCGCCACCGATCGTACCACCTTCAAAAACACCCTTCCTCTCATCTCCTATGAAGATATTCAACCTGATATCAACCGTATTGCCAATGGGGACTCCTCTCCCATCCTCTGTTCCTCTCCCATTTCTGAGTTTCTCACCAGCTCCGGGACGTCGGGAGGAGAGAGAAAACTGATGCCAACAATAGAAGAAGAGCTAGAAAGAAGATCATTACTGTACAGTTTACTAATGCCAGTAATGAGCCAATTCGTAGGAGGGTTAGAGAAAGGCAAAGGAATGTATTTCTTATTCGTAAAATCAGAATCCAAAACCCCAAGTGGATTAGTAGCTCGACCTGTATTAACAAGCTATTACAAAAGCCCTCATTTCAAACACCGCCCATTTGACCCATACACCAATTACACAAGCCCAAACGAAGCCATCCTCTGTTCCGATGCTTACCAGAGCATGTACGCTCAGCTCCTCTGCGGCCTCCACCACCGCGCCGAAGTCCTCCGTGTCGGCGCCGTCTTCGCCTCCGGCTTCATCCGGGCTATCCGCTTCTTGGAAAAGCACTTTTCACTGCTCTGCCACGACATTCGAACAGGGACTCTGAACCCAGAAATTACGGACCAGGGGATTCGTGAATCGTTGAGGAAAATTCTGAAAGCTGATCCGAAATTGGCGGATTTTGTGGAAGGGGAGTGTAGTAAGAAGAGTTGGGAAGGGATAATTAGTAGGATTTGGCCGAATACGAAGTATGTGGATGTGATTGTAACAGGGACAATGTCGCAGTATATAAGAACTCTGGATTATTACAGTAATGGGTTGCCGATTGTTTGTACAATGTATGCTTCGTCGGAGTGTTATTTTGGGGTGAATTTGAAGCCGATGTGTAAGCCGGAGGAAGTGGCGTATACGCTAATACCAACAATGGCGTATTTTGAGTTTCTTCCTGTGAATAGGAATAAAGGGTTGAGTGAGAAAGAGTTGCAGAAGGAGCTTGTGGATCTTGTTGATGTTCAGCTTGGTCAGGAGTATGAGCTCGTTGTTACCACCTATGCAGGTTTGTATAGGTATAGAGTGGGAGATATACTAAGAGTGGCAGGGTTCAAGAACAATGCACCACAATTCAACTTCATTTGCAGAAAAAATGTTGCTTTAAGCATAGATTCAGACAAGACAGATGAGGTTGAATTACAAAATGCTGTCAAAAATGCATTAAACCATTTGATTCCATTTGATGTCACTTTGAGTGAGTACACAAGCTGTGTAAACACTTCTAAAATCCCAGGTCATTATGTACTCTATTGGGAGCTAACTCTGAATAATGGAATCATCAAAACAACACCACCACCAATTCCACCCTCTGTCTTTGAGGATTGTTGCTTCACAATTGAAGACTCTCTCAACACCGTCTACCGTCAGGGTCGGGTCTCCGATAAGTCCATCGGTCCCCTCGAGATCAAGATCGTCGAAACCGGGACGTTCGACAAGCTCATGGACTATGCAATTAGCTTAGGAGCATCAATAAATCAGTATAAGACACCAAGATGTGTTAAGTATGAACCCATTATTCAACTATTGAATTCAAGGGTTGTGTCAAATTACTTCAGCCCCAAATGCCCTAAATGGGTTCCAGGTCATAAGCAATGGAATTGA 1833 44.63 MPEEAPQKSSFFSTTEYYKLLEKNKKTLQFIEDVTANADQVQRRVLSEILSRNADVEYLHRHGLHGATDRTTFKNTLPLISYEDIQPDINRIANGDSSPILCSSPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFVGGLEKGKGMYFLFVKSESKTPSGLVARPVLTSYYKSPHFKHRPFDPYTNYTSPNEAILCSDAYQSMYAQLLCGLHHRAEVLRVGAVFASGFIRAIRFLEKHFSLLCHDIRTGTLNPEITDQGIRESLRKILKADPKLADFVEGECSKKSWEGIISRIWPNTKYVDVIVTGTMSQYIRTLDYYSNGLPIVCTMYASSECYFGVNLKPMCKPEEVAYTLIPTMAYFEFLPVNRNKGLSEKELQKELVDLVDVQLGQEYELVVTTYAGLYRYRVGDILRVAGFKNNAPQFNFICRKNVALSIDSDKTDEVELQNAVKNALNHLIPFDVTLSEYTSCVNTSKIPGHYVLYWELTLNNGIIKTTPPPIPPSVFEDCCFTIEDSLNTVYRQGRVSDKSIGPLEIKIVETGTFDKLMDYAISLGASINQYKTPRCVKYEPIIQLLNSRVVSNYFSPKCPKWVPGHKQWN 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19755963 19759645 - Lsi04G012630.1 Lsi04g01263 661312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01263 610 Pfam GH3 auxin-responsive promoter 31 578 IPR004993 -
Lsi04g01263 610 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 14 609 IPR004993 -
Lsi04g01263 610 PANTHER BNAC03G14570D PROTEIN 14 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01263 K14487 GH3; auxin responsive GH3 gene family - csv:101219992 1095.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00935 Lsi-Chr1:7555670 Lsi04g01263 Lsi-Chr4:19755963 0 dispersed
Lsi04g01263 Lsi-Chr4:19755963 Lsi05g00646 Lsi-Chr5:8202989 0 dispersed
Lsi04g01263 Lsi-Chr4:19755963 Lsi05g00252 Lsi-Chr5:3230445 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g386 Blo03g00641 Blo03g01430 . Bda09g00369 Bpe09g00205 Bpe08g01147 Bma10g00526 Bma13g01007 Cmo16g00925 . . Cma09g00908 . Car09g00826 Sed07g2637 Cpe06g00731 . Bhi09g01971 Tan01g4477 Cmetu04g2100 . Hepe01g1332 Mch11g1129 . . . . . . . . Cone3ag1370 Cone10ag1303 . . Lsi04g01263 . . . Blo07g00928 Blo10g00791 Bda05g00746 Bda12g00877 . Bpe03g00811 . . . . Cmo09g00903 . . Car04g00869 . . Cpe01g00842 . . . . . . . Cla05g01563 Cam05g1673 Cec05g1677 Cco05g1717 Clacu05g1665 Cmu05g1557 Cre05g1671 . . Chy06g01773 Cme04g00757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000492 2 4 3 1 3 2 5 2 2 4 2 2 5 4 3 5 2 6 4 2 4 4 3 6 10 4 5 8 4 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01263 Lsi_Chr04 FPKM 0.0 2.609217 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0