Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01264 ATGGCTAAGTTATCGACATTGACGAAGATTTTCCTCGTGGATGGACCAAGGAAGAGAATGATACTTCAAGTAGCAGGAAGGATCAATTTGACCAGACAAACAAGTCAAGTTGTAGGCAAAACCAAACCAAACCAAACTCAATGCGGAATGGCAAATTTTCCTCTGATATCTTTTGTTACGATTATGTTTTTATATTCTTCTTTCAATATCTCTATGGCTGTTGATTTCTTAACAGCTTCTCAAAACCTCAGTGATGACAACACCTTGGTCTCTGAAAAAGGAATTTTCGAGCTGGGTTTCTTTCGTCCAGGAATCTCTAAGAACGGTTACTTGGGAATTTGGTACAAAATCATCCCAATTCCCACTGTTGTTTGGGTTGCCAACAGAGAAACCCCGCTCAAAGATTTTTCCAGTATATTGAGAATAAACACCATAACGAATCATGTTGTTCTCGTCCAAAACGAAACTATTATTTGGTCAGCAAAGTCGTTAAAACCAATGGAAAATCCCAGGCTACAGATGTTGGACACTGGAAATTTAGCTCTGAAAGATGGAAACTCAGAGGAGATATTGTGGCAAAGCTTTGATTATCCAACTGATACATTGTTGCCAGAAATGAAGCTGGGATGGGATTATGAAAATGGCATAAACAGACGGTTATCAGCCTGGAGAAACTGGGATGACCCATCTCCTGGAACCTTAATATTGGAAATGGAAAATCATAGCTACCCAGAACTCGCCATGTGGAATGGTACACAAGAGATCGTGAGAACTGGACCTTGGAATGGGATGCGGTTCAGCTCCAAATCCATTTCTGGTCTCCCAATTTTGGTCTACCATTATGTGAATAATAAAACTGAGCTTTATTTCAGCTACCAGCTCATAAACAACTCTCTGATTGGCAGAATGGTGTTGAACCAATCCAGGTTCAGGAGAGAGGCCTTACTGTGGTCAGAAGCTGAGAAAAACTGGAAGATATATGCCACGATACCGAGAGATTACTGCGACACATACAACTTTTGTGGTGCTTATGGGAACTGTGACATTGAAAATATGCCTGCTTGTCAATGTCTGAAAGGGTTTCAGCCAAGGGTGCCAGAGAATTGGAATAAGATGGATTATACAGAAGGGTGTGTCAGAAATAAGCCTCTGAATTGCTCGGATGAAGTTGGCTTTGCAAAGTTACCAGGGCTGAAATTGCCTGACACTACATATTCTTGGGTTAATGAAAGCATGAGTTTAAATGAATGCGGGGAAAAATGTTTGAGAAATTGTTCTTGTATGGCGTTTGCAAATACAAATATTAGTGGATCAGGTAGTGGCTGTGCCATTTGGCTCAATGATCTTATTGATGTTAAAGTGGTTCTAAAAGGTGGGCAAGACTTGTATGTTCGAATGCTTGCTTCTGAGTTAGACATAAAGAAGAAGAATTTGGTTGTCATTGGCGTTATAGTTTCTGCTACTCTCCTTATAATTGCTGGCTTGGTTTTGGTTGGATTTTACGTTATCAAAAGCAGGAAAATCCTGGAAGTTAAGGAACTTGAAGTGCAAGAGGAAGACTTGGAGCTCCCATTATTTGACCTATCAACATTATCAAATGCCACAGACAATTTTTCAAACTCTAACAAGCTTGGAGAAGGTGGCTTTGGTGCAGTATTCCGGGGTAAACTCAAAGATGGACAAGAAATTGCTGTAAAAAGGCTTTCCAACCATTCAAGACAAGGAACTAATGAATTCAAGAATGAAGTAAAACTTATAGCCAAACTTCAGCATCGGAATCTTGTAAAGCTTCTGGGTTGCTGCATCCAAGAGGAAGAAAAAATGCATGGAAGTTATGGAATGAAGGAAGACCATTAG 1857 40.01 MAKLSTLTKIFLVDGPRKRMILQVAGRINLTRQTSQVVGKTKPNQTQCGMANFPLISFVTIMFLYSSFNISMAVDFLTASQNLSDDNTLVSEKGIFELGFFRPGISKNGYLGIWYKIIPIPTVVWVANRETPLKDFSSILRINTITNHVVLVQNETIIWSAKSLKPMENPRLQMLDTGNLALKDGNSEEILWQSFDYPTDTLLPEMKLGWDYENGINRRLSAWRNWDDPSPGTLILEMENHSYPELAMWNGTQEIVRTGPWNGMRFSSKSISGLPILVYHYVNNKTELYFSYQLINNSLIGRMVLNQSRFRREALLWSEAEKNWKIYATIPRDYCDTYNFCGAYGNCDIENMPACQCLKGFQPRVPENWNKMDYTEGCVRNKPLNCSDEVGFAKLPGLKLPDTTYSWVNESMSLNECGEKCLRNCSCMAFANTNISGSGSGCAIWLNDLIDVKVVLKGGQDLYVRMLASELDIKKKNLVVIGVIVSATLLIIAGLVLVGFYVIKSRKILEVKELEVQEEDLELPLFDLSTLSNATDNFSNSNKLGEGGFGAVFRGKLKDGQEIAVKRLSNHSRQGTNEFKNEVKLIAKLQHRNLVKLLGCCIQEEEKMHGSYGMKEDH 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19862104 19867778 - Lsi04G012640.1 Lsi04g01264 661313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01264 618 Pfam PAN-like domain 386 452 IPR003609 -
Lsi04g01264 618 Gene3D Phosphorylase Kinase; domain 1 512 609 - -
Lsi04g01264 618 SMART ntp_6 387 466 IPR003609 -
Lsi04g01264 618 Pfam S-locus glycoprotein domain 257 364 IPR000858 GO:0048544
Lsi04g01264 618 PANTHER - 75 608 - -
Lsi04g01264 618 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524
Lsi04g01264 618 SMART blect_4 80 198 IPR001480 -
Lsi04g01264 618 CDD PAN_AP_plant 383 465 - -
Lsi04g01264 618 ProSiteProfiles PAN/Apple domain profile. 386 467 IPR003609 -
Lsi04g01264 618 ProSiteProfiles Protein kinase domain profile. 538 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01264 618 Gene3D Hepatocyte Growth Factor 383 468 - -
Lsi04g01264 618 Pfam Protein tyrosine and serine/threonine kinase 541 607 IPR001245 GO:0004672|GO:0006468
Lsi04g01264 618 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 75 608 - -
Lsi04g01264 618 SUPERFAMILY Protein kinase-like (PK-like) 521 605 IPR011009 -
Lsi04g01264 618 CDD B_lectin 83 198 IPR001480 -
Lsi04g01264 618 SUPERFAMILY alpha-D-mannose-specific plant lectins 123 229 IPR036426 -
Lsi04g01264 618 Pfam D-mannose binding lectin 122 224 IPR001480 -
Lsi04g01264 618 Gene3D - 69 195 IPR036426 -
Lsi04g01264 618 ProSiteProfiles Bulb-type lectin domain profile. 74 195 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01264 - - - bhj:120085249 1073.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01264 Lsi-Chr4:19862104 Lsi04g01266 Lsi-Chr4:19919294 0 dispersed
Lsi04g01264 Lsi-Chr4:19862104 Lsi04g01265 Lsi-Chr4:19877028 0 tandem
Lsi02g00673 Lsi-Chr2:6041239 Lsi04g01264 Lsi-Chr4:19862104 1.00E-123 wgd
Lsi04g01264 Lsi-Chr4:19862104 Lsi05g00670 Lsi-Chr5:8832092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01264 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83583 PF00954 S_locus_glycop 1.00E-25 No_clan Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01264 Lsi_Chr04 FPKM 25.109615 22.608053 20.582024 22.119263 11.181602 11.129916 12.921844 24.175323 21.486256 25.600534