Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01265 ATGCTCTCTTTACTTTTAAACACTCTCTCCTCACAAATACTCTGTTCTGAAACAAACCCCAATGCTAAAAAAATGGCAAATGCTTCAGTAACTCTGTTTCTGTTTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGCCACTGTTGATTTCTTAACTTCCTCACAAAACCTCACCCATGGCGCCACTCTTGTCTCCGCAAAAGGGTTTTTCGAACTGGGTTTCTTCAGCCCAGGAAATTCCACCAATCGTTACTTGGGTATTTGGTACAAAATCATCCCAGTTCGTACAATTGTTTGGGTCGCCAACAGAGAAAATCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACTACCTCCAGCGATCTCCTCCTTTTCGAGAATGACGCCGTTGTTTGGTTTGGAAAATCGTTGAAACCAGTCAAAACCCCCAACCTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCGGAGGTAATTTCATGGCAAAGCTTCGATTACCCAACCGATACATTACTCCCCGGAATGAAACTCGGATGGGACTTCGAAAATGGAATCCAACGCAGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCGGGGAGTTTAACGATGGAAATGATGAACACGAGCTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCAATCTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTCAGTTACAGCTACGAGCTCATAAACTCTTCGTTAATCGGAAGAATGGTGTTGAATCAAACGGCATTCAGAAGAGAAGCTTTGTTATGGTCTGAATCTGAGAAGATTTGGAAGCTGTATGCGACTATGCCTAGGGATTACTGCGATACTTACGGTCTTTGTGGTGCATTTGGTAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTACACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGCTTCCGGGATTGAAATTGCCTGATACAAAGCAATCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGACAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGATCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAAGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACGAAGAAGACGAGTTCGGTTATCGTCGGCGTTATCATCGGAGCGGCGGTTCTGGTGATTGCTGGTCTCACTTTGATTGGGTTTTACCTTATTAGAAGTAGAAGGAGAAGTGTTCAAGGAGTAAGCAACGATCTTGAAGGTCAAGAAGAAGATTTGGAGCTCCCATTATTCGACTTAACAACAATATCTAATGCCACCGACAATTTTTCAAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTAGGGGTAGACTTGGAGATGGACATGAAATTGCAGTTAAGAGACTTTCTAGCTATTCAAGACAAGGAACTGATGAATTCAAGAATGAAGTGATACTTATTGCCAAACTTCAACATAGAAATCTCGCATGGAAGTTATGGAATGAAGGAAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTTTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTTTTGTGCTTGCAACAACTTCCTGAGGATAGACCAACCATGCCAAATGTAGTTTTAATGCTAAGTAGTGAGAGCTCCTTGGCACAACCAAAACAACCAGGATTCTACATGGAAAGAGATTCTCTTGAACCATTTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGACGCTAGATAA 2022 42.04 MLSLLLNTLSSQILCSETNPNAKKMANASVTLFLFLSLFLFSSPSATVDFLTSSQNLTHGATLVSAKGFFELGFFSPGNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTSSDLLLFENDAVVWFGKSLKPVKTPNLHLLDNGNLVLKDAESEVISWQSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKSSDDPSPGSLTMEMMNTSYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTAFRREALLWSESEKIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECRDKCLRNCSCVAFANTDIRGSGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETKKTSSVIVGVIIGAAVLVIAGLTLIGFYLIRSRRRSVQGVSNDLEGQEEDLELPLFDLTTISNATDNFSNSNKLGEGGFGAVFRGRLGDGHEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMPNVVLMLSSESSLAQPKQPGFYMERDSLEPFLDGKNESSTTNELTITLLDAR 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19877028 19881085 - Lsi04G012650.1 Lsi04g01265 661314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01265 673 Pfam S-locus glycoprotein domain 233 340 IPR000858 GO:0048544
Lsi04g01265 673 Gene3D Phosphorylase Kinase; domain 1 481 577 - -
Lsi04g01265 673 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 47 573 - -
Lsi04g01265 673 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 574 670 - -
Lsi04g01265 673 Pfam Domain of unknown function (DUF3403) 629 673 IPR021820 GO:0004674
Lsi04g01265 673 SMART ntp_6 363 442 IPR003609 -
Lsi04g01265 673 SUPERFAMILY Protein kinase-like (PK-like) 500 573 IPR011009 -
Lsi04g01265 673 CDD B_lectin 57 174 IPR001480 -
Lsi04g01265 673 Gene3D Hepatocyte Growth Factor 358 444 - -
Lsi04g01265 673 Gene3D - 44 171 IPR036426 -
Lsi04g01265 673 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Lsi04g01265 673 ProSiteProfiles PAN/Apple domain profile. 362 443 IPR003609 -
Lsi04g01265 673 SMART blect_4 54 174 IPR001480 -
Lsi04g01265 673 ProSiteProfiles Protein kinase domain profile. 517 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01265 673 Pfam D-mannose binding lectin 96 200 IPR001480 -
Lsi04g01265 673 SUPERFAMILY alpha-D-mannose-specific plant lectins 97 205 IPR036426 -
Lsi04g01265 673 PANTHER - 47 573 - -
Lsi04g01265 673 PANTHER - 574 670 - -
Lsi04g01265 673 CDD PAN_AP_plant 360 441 - -
Lsi04g01265 673 ProSiteProfiles Bulb-type lectin domain profile. 48 171 IPR001480 -
Lsi04g01265 673 Pfam PAN-like domain 362 428 IPR003609 -
Lsi04g01265 673 CDD TM_EGFR-like 449 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01265 - - - csv:101216184 966.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01265 Lsi-Chr4:19877028 Lsi05g00670 Lsi-Chr5:8832092 5.94E-27 dispersed
Lsi04g01264 Lsi-Chr4:19862104 Lsi04g01265 Lsi-Chr4:19877028 0 tandem
Lsi04g01265 Lsi-Chr4:19877028 Lsi04g01266 Lsi-Chr4:19919294 0 tandem
Lsi02g00679 Lsi-Chr2:6089580 Lsi04g01265 Lsi-Chr4:19877028 6.50E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83584 PF00954 S_locus_glycop 1.40E-25 No_clan Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01265 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0