Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01266 ATGGCAAATGCTTTACTAACAACTCTGTTTCTGTTTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGCCGCTGTTGATTTCTTAACTTCCTCACAAAACCTCACCCATGGCGCCACTCTTGTCTCCGCAAAAGGGTCTTTCGAACTGGGTTTCTTCAGCCCAGGCAATTCCACCAATCGTTACTTGGGTATTTGGTACAAAATCATCCCAGTTCGTTCAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCCCTTGTCGCTCTCGAAATCAACACTACCACCAGCGATCTCCTCCTTTTTGAGAACAACGCCGTTGTTTGGTTTGGAAAATCGTTGAAACCAGTCAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTTCTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTCCCCGGAATGAAACTCGGATGGGACTTCGAAAATGGAATCCAACGCCGGTTATCCGCTTGGAAAACCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACGAGCTACCCAGAACCAGCGATGTGGAACGGGTCGAAAGAGTTCATGAGAACCGGACCATGGAACGGCCTTCGATTCAGCGCAAAACCCACACAGGCCTTACCGGTTTTGGTTTACAGCTATGTAAACAACAAATCCGAGCTCAGTTTCAGCTACAACGTCATAGACTCCTCAATCAGAAGAATGGTGTTGAATCAAACGGTATTCAGAAGAGAGTATTTGTTCTGGTCGGAATCTGAGAAGATTTGGAAGCTGTTTGCAGCTATGCCGAGGGATTACTGCGATACATATGGGCGTTGTGGTGCGTTTAGTAGCTGTGACATTGAGCCTTCTTGTCAATGTCTAAAAGGGTCTCATCCTAAACTACAAGAGAAATGGAATTCGATGGATTATACTGAAGGGTGTGTGAGAAACAGGGTTTTGAATTGTTCTGATAAAATTAGGTTTGCGAAGCTTAGGGGGCTGAAATTGCCTGATACAAAACAGTCTTGGGTTAATGAAAGTATGAGTTCGAATGAATGTAGAGACAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGATCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTGGTTCAAGAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGGAGTAGGCAAGGATCTTGATGGGCAAGAAGAAGACTTGGAGCTCCCATTATTGAACTTAACAACAATATCTAATGCCACAGACAAATTTTCAAACTCCAACAACCTTGGAGAAGGTGGTTTTGGCGTAGTCTTTAAGGCATGGAAGCTATGGAACGAAGGAAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATACTTTATCTGAAGTATTGCGATGCATTCATGTGAGCCTTTTGTGCTTGCAACAATTTCCTGAAGATAGACCAACCATGTCAAATGTGGTACTAATGCTAAGTACTGAGAGCGCCCTGGTACAGCCAAAACAACCAGGATTCTACCTGGAAAGTGATTCTCTTAAAGCATATAATAATTCCCTTGGCAAGAATGAATCTTCTACTACCAATGAATTAACTGTTACTCTCTTGGAGGCTAGATAA 1710 43.16 MANALLTTLFLFLSLFLFSSPSAAVDFLTSSQNLTHGATLVSAKGSFELGFFSPGNSTNRYLGIWYKIIPVRSIVWVANRENPITNSSALVALEINTTTSDLLLFENNAVVWFGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKTSDDPSPGSLTMEMMNTSYPEPAMWNGSKEFMRTGPWNGLRFSAKPTQALPVLVYSYVNNKSELSFSYNVIDSSIRRMVLNQTVFRREYLFWSESEKIWKLFAAMPRDYCDTYGRCGAFSSCDIEPSCQCLKGSHPKLQEKWNSMDYTEGCVRNRVLNCSDKIRFAKLRGLKLPDTKQSWVNESMSSNECRDKCLRNCSCVAFANTDIRGSGSGCAIWFGDLVDIKVVQEGGQDLYVRMLASELGVGKDLDGQEEDLELPLLNLTTISNATDKFSNSNNLGEGGFGVVFKAWKLWNEGKPLELIDATIGESYTLSEVLRCIHVSLLCLQQFPEDRPTMSNVVLMLSTESALVQPKQPGFYLESDSLKAYNNSLGKNESSTTNELTVTLLEAR 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19919294 19924423 - Lsi04G012660.1 Lsi04g01266 661315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01266 569 Gene3D - 21 148 IPR036426 -
Lsi04g01266 569 CDD PAN_AP_plant 334 415 - -
Lsi04g01266 569 Pfam Domain of unknown function (DUF3403) 523 569 IPR021820 GO:0004674
Lsi04g01266 569 Pfam S-locus glycoprotein domain 210 314 IPR000858 GO:0048544
Lsi04g01266 569 SMART blect_4 31 151 IPR001480 -
Lsi04g01266 569 Pfam D-mannose binding lectin 74 177 IPR001480 -
Lsi04g01266 569 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Lsi04g01266 569 SMART ntp_6 337 416 IPR003609 -
Lsi04g01266 569 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 182 IPR036426 -
Lsi04g01266 569 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Lsi04g01266 569 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 428 467 - -
Lsi04g01266 569 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 13 422 - -
Lsi04g01266 569 CDD B_lectin 34 151 IPR001480 -
Lsi04g01266 569 PANTHER - 428 467 - -
Lsi04g01266 569 PANTHER - 468 567 - -
Lsi04g01266 569 PANTHER - 13 422 - -
Lsi04g01266 569 Pfam PAN-like domain 336 402 IPR003609 -
Lsi04g01266 569 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 468 567 - -
Lsi04g01266 569 Gene3D Transferase(Phosphotransferase) domain 1 441 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01266 - - - csv:101216184 762.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01264 Lsi-Chr4:19862104 Lsi04g01266 Lsi-Chr4:19919294 0 dispersed
Lsi04g01266 Lsi-Chr4:19919294 Lsi05g00670 Lsi-Chr5:8832092 2.58E-28 dispersed
Lsi04g01265 Lsi-Chr4:19877028 Lsi04g01266 Lsi-Chr4:19919294 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g365 . . . . . . . . . . . . . . . . Cpe02g00733 . . . . . . . . . . . . . . . Cone9ag0121 . . Lsi04g01266 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01266 Lsi_Chr04 FPKM 22.759975 23.709539 2.775375 1.962697 1.275009 1.801603 2.338602 1.327716 1.126214 0.982961