Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01267 ATGAAGAAGTGCGAGCTGTGTGGACAGCAAGCGAGGATGTTCTGCGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAAGGTTCACTGTGCAAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCACGTATGTCAGTCGCTGACTCCATGGGCGGCCTCTGGTCGGAAGCTTACGCCGACGGTTTCTGTGTGCGAGGGATGTGTCGAAGTCCATGGTGGTAAATGTGAGCAAGGTGGATTTCAAGAGCGGTGTAGAGATAACGAGGAGGAAGTTGATGGTGGTGGTGATTTTGACGATGGTGAAGGTTTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGATGAAGATGAGGACGAGGAAGACGAGGAGGAAGAAGAGGAAGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCTTATGCATCTTCTTCGTCGCCACCACCGCCTCCGACAGTGACTTCTAGCAGCGAGGGCGAGATTTCAGCCGGCGCTGGTGTCGCATCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTGTTCTTCTGCACCACCGAGTACAAGGCCGTTTTTCAATGACGAAGCGACATCCTCGAGTTCCCTTAGGCCACGGAAGCAAGCAAGAGTTACAGGACCAACCCAATCAGCCACATCCACTCCGGATGATGAAGGTTGTAAAACCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCAGCTTCCCACCGACAGTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA 849 51.0 MKKCELCGQQARMFCESDQANLCWDCDEKVHCANFLVAKHSRSLLCHVCQSLTPWAASGRKLTPTVSVCEGCVEVHGGKCEQGGFQERCRDNEEEVDGGGDFDDGEGFDSYEGGDSEEDDDGDEDEDEEDEEEEEEEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGVDLDSDDEIECSSAPPSTRPFFNDEATSSSSLRPRKQARVTGPTQSATSTPDDEGCKTELKSTAVVRSIQRLQNQLPTDSNDASKMIFGICKMSRDQNR 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20001468 20002891 + Lsi04G012670.1 Lsi04g01267 661316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01267 282 MobiDBLite consensus disorder prediction 199 236 - -
Lsi04g01267 282 PANTHER OS08G0178800 PROTEIN 1 242 - -
Lsi04g01267 282 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Lsi04g01267 282 MobiDBLite consensus disorder prediction 91 241 - -
Lsi04g01267 282 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lsi04g01267 282 CDD Bbox1_BBX-like 3 45 - -
Lsi04g01267 282 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 242 - -
Lsi04g01267 282 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Lsi04g01267 282 MobiDBLite consensus disorder prediction 96 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01267 - - - bhj:120086748 417.542
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00371 Lsi-Chr1:3266268 Lsi04g01267 Lsi-Chr4:20001468 9.77E-26 dispersed
Lsi04g01267 Lsi-Chr4:20001468 Lsi11g01473 Lsi-Chr11:23292852 9.56E-15 dispersed
Lsi02g00695 Lsi-Chr2:6204465 Lsi04g01267 Lsi-Chr4:20001468 3.19E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g324 . . Bda07g00265 . . . . . . . . . . . . Cpe06g00728 Cpe02g00732 . . . . . . . . . . . . . . Cone6ag0104 Cone9ag0124 . . Lsi04g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25186 PF00643 zf-B_box 4.80E-06 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01267 Lsi_Chr04 FPKM 4.330837 4.627348 0.559966 0.0 0.385969 0.0 0.705021 0.604738 0.31391 0.387746