Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01273 ATGGTTACAAAGCTCTTCCTGAGGCCACAGTCGCTTCCTCTCACAGCCTTTACCCCGAAATTCATCTTCCCCGGGAAGTATTTTCTCCCGATATGCTTCACCTCACCGTTTTCCTCCACCACAATCCACTCCCAATCTCAATTCTCCAACCAGAGTTTACCCTATGGGCCTTCTCTTTGCAAGGGCGTCCATCCATTTCCATCGGTTTCTAGACAGTCTCCAATCAATCATTCTCAACCTCTTCTCAAGACCCTAATCGAAAATCCGGAGAGGGAGCATTTGCAAAACGAGGACAGTGAAGAAGCTATATTAGATGAAGATGCCTTCACTCGGATTTTCGACATTGCTGCACTTCGAGTTCCTTCCAGAGGCTGTTTCGAGCTTGAGAATCGGCTGCGTGGCCATCTCTTGAACTGGCCGCGGATTCACAACATTGCTAGAGTTCCCGGCGATGAGGTCGAGGCCGAATTGGTGGAGCTTGTGGGAGAGCAGAATTGGAGCAATTCCAACGATGGAGATGGAATTCATATTGATTCGTTGCATCGGAGAATTTATGGGAAAGCTGAGGACGATGGGGAGCCTCTGAGTCCCGTGTTGTACAGGGAAAAGCTAGTGAAAACGTTTGATTCCAAAGGATATGTGAACTTCAGACATTTGGCGAAAATGTCGAGGCCGAAGAAAAGGAAGAAGAAGAAGGAAGAAGGGAGAGATGAAGGGATGAGAAGAATGGGGAAAAGTGAAGTTGCCGTTGTGGAGGTTGTGGAGAGTGAGGAACTGGAAGTGGATGATATGAAGGGATTGTTGGGAGATGAGTTTAAGGGTGGAAAATGGAGGGGTTCGACTAGATTGTTGCTTTTGGACGAACGATATGCAGACAAAGGCGTAGAAGAGCTTCCAGAGGCGATTAAGGCTCTGCTGAAAGGAGATACCCAAGAAAGGATGAAACCGACAACTGAGCTTGTGAGGTGCAGGCTTACTTTATTTTATGATTATTGGCAGATGAATGAGGTTTTGGAGTCCTTCCTTCCAAAGGATGTGATTATTCCTTCAGCCTTTGAAACCGTAGGACATATTGCACACCTGAACCTTAGAGATGAACATCTCCCGTACAAGAAGCTTATAGCCAAGGTTGTTTTGGATAAAAATAAGCCAAAAATACAAACCGTAGTGAATAAGATTGATGTCATCAGCAATGATTACAGGACAATGCAACTTGAGGTTTTAGCTGGGAACCACTCCCTTGTGACCACTGTAGTTGAGAATGGTTTACGATTTCATTTGGACTTGGCAACAGTGTACTGGAATTCAAGGCTCGCAACTGAGAGACACAGGCTAATAAGTGGCTTTACCTGCAATGATGTTGTTTGTGATGTCTTTGCTGGAGTTGGTCCAATATCAATATCTGCTGCAAGAATAGTAAAGAAAGTATATGCCAATGATTTGAATCCCTATGCGGTTGAGTATCTGGAAAGAAATAGCGTTGCCAATAAACTCGAGAGGAAGATTGAGGTTTTTAACATGGAAGGAAGGAGATTCATCAGCGCTATATTTGCAAGTGAGAAAGCTCCTAAAATAACACAAGTTGTCATGAATTTGCCAAATGATGCTGCTGAATATCTAGATACTTTCAAAGGAATACTAAGAGACCGATCGGATATAGAATTTACATTGCCAATGATCCATGTTTATGGATTCTCTAAAGCTCGAGATCCAGAATTCGACTTTCATGAGAGGATAAGAATTGCACTAACTGAGGTTGCAGTTGATGTGGATATGAGAAGAGTCCGACTTGTTGCACCAGGAAAATGGATGCTATGTGCTTCATTTAGACTTCCTAGAAGTGTTGCTTTATCAAAGCCTAGACTTCATAACATGTAA 1878 43.56 MVTKLFLRPQSLPLTAFTPKFIFPGKYFLPICFTSPFSSTTIHSQSQFSNQSLPYGPSLCKGVHPFPSVSRQSPINHSQPLLKTLIENPEREHLQNEDSEEAILDEDAFTRIFDIAALRVPSRGCFELENRLRGHLLNWPRIHNIARVPGDEVEAELVELVGEQNWSNSNDGDGIHIDSLHRRIYGKAEDDGEPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRPKKRKKKKEEGRDEGMRRMGKSEVAVVEVVESEELEVDDMKGLLGDEFKGGKWRGSTRLLLLDERYADKGVEELPEAIKALLKGDTQERMKPTTELVRCRLTLFYDYWQMNEVLESFLPKDVIIPSAFETVGHIAHLNLRDEHLPYKKLIAKVVLDKNKPKIQTVVNKIDVISNDYRTMQLEVLAGNHSLVTTVVENGLRFHLDLATVYWNSRLATERHRLISGFTCNDVVCDVFAGVGPISISAARIVKKVYANDLNPYAVEYLERNSVANKLERKIEVFNMEGRRFISAIFASEKAPKITQVVMNLPNDAAEYLDTFKGILRDRSDIEFTLPMIHVYGFSKARDPEFDFHERIRIALTEVAVDVDMRRVRLVAPGKWMLCASFRLPRSVALSKPRLHNM 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20081665 20087285 - Lsi04G012730.1 Lsi04g01273 661322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01273 625 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 352 613 IPR030382 -
Lsi04g01273 625 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 35 622 - -
Lsi04g01273 625 Gene3D Vaccinia Virus protein VP39 415 611 IPR029063 -
Lsi04g01273 625 MobiDBLite consensus disorder prediction 222 242 - -
Lsi04g01273 625 Gene3D - 333 411 - -
Lsi04g01273 625 CDD AdoMet_MTases 455 506 - -
Lsi04g01273 625 Pfam Met-10+ like-protein 351 550 IPR030382 -
Lsi04g01273 625 PANTHER TRNA METHYLTRANSFERASE 35 622 - -
Lsi04g01273 625 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 348 613 IPR029063 -
Lsi04g01273 625 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 101 613 IPR025792 GO:0009019|GO:0030488
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01273 K15429 TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] - csv:101209881 1092.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01273 Lsi-Chr4:20081665 Lsi11g00279 Lsi-Chr11:2847020 5.21E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01273 Lsi_Chr04 FPKM 12.968627 15.071675 0.92972 0.976913 5.574631 6.319217 6.395836 0.035353 0.033903 0.117541